Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1842
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0401 - 8575886-8575935,8576518-8576617,8576798-8576959,857... 33 0.20
03_05_0151 - 21284751-21284800,21285422-21285521,21285702-212858... 33 0.27
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 31 1.4
04_03_1035 - 21887562-21890030 31 1.4
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 31 1.4
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 29 5.8
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148... 29 5.8
09_04_0666 + 19318512-19318578,19319185-19319273,19321344-193221... 28 7.7
>09_02_0401 -
8575886-8575935,8576518-8576617,8576798-8576959,
8577106-8577253,8577436-8577458,8577615-8577685,
8577792-8577878,8578039-8578470,8578574-8579009
Length = 502
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 141 PIPSQSPDLYC*NPHYKGNVDPLKELFLLSTNH 43
P+P P LY NP+YKG+ PL +F+ +H
Sbjct: 129 PLPLPPPMLYNPNPYYKGDQPPLPFVFMQQQHH 161
>03_05_0151 -
21284751-21284800,21285422-21285521,21285702-21285863,
21286010-21286157,21286286-21286362,21286519-21286589,
21286696-21286782,21286943-21287374,21287478-21287913
Length = 520
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 141 PIPSQSPDLYC*NPHYKGNVDPLKELFLLSTNH 43
P+P P LY NP+YKG+ PL +F+ +H
Sbjct: 129 PLPLPPPMLYNPNPYYKGDQPPLPFVFMQQHHH 161
>07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +2
Query: 125 DWDGMGEFYVSYPWSGSAVPLVTLTSVRADLKTWCLRKWSCSFFFLRYTLGVLIIKPVGT 304
D D GE S S +AVP+ L S+ L+T CL + FL Y+ ++ P
Sbjct: 817 DHDIFGEASESTAASANAVPVTDLLSIDQLLETVCLALLNSFSMFLLYSSDEVVTDPAP- 875
Query: 305 LHTSR 319
HT R
Sbjct: 876 -HTER 879
>04_03_1035 - 21887562-21890030
Length = 822
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 767 HLRRRCRTIAGMQSGPLALWTSRSQSSCVTTRCVTNLRQGAVTP---EDVGQPGSLVIQS 597
HL RR + A S PLA W SR + + R + + AV P D+ + ++++ S
Sbjct: 577 HLHRRAASAAAPLSPPLASWPSRLRLALGAARGIEYMHTYAVPPIIHRDI-KSSNILLDS 635
Query: 596 QVRGKEFDQKVSLLDS 549
K D +SLL++
Sbjct: 636 CWTAKVSDFGLSLLNT 651
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 707 TSRSQSSCVTTRCVTNLRQGAVTPEDVGQPGSLVIQS 597
T S++ C RC TN R+G+ EDVG V +S
Sbjct: 38 TYGSETDCKEERCDTNKRKGSAMGEDVGDDSRSVDRS 74
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 LRYTLGVLIIKPVGTLHTSRGPSMQHGIMVTRCQDPSVSGEGRNLTPLLG-PIRGLLPKR 436
L LGV I P+G + S+ + P S G L+ LLG RG+ P
Sbjct: 339 LNVGLGVGAILPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSG--LSSLLGFRTRGIGPTE 396
Query: 437 NRNTLPEFASDGRAIPPG 490
R +P + DG A PG
Sbjct: 397 PRRLVPSESEDGSAASPG 414
>01_06_0569 +
30313337-30313650,30314271-30314353,30314763-30314876,
30315876-30315938,30316289-30316380,30316464-30316544,
30316629-30316727,30316795-30316933,30317017-30317165
Length = 377
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 558 ARLQTRPAEVTFCSLSQQRESTVPGGIALPSLANSGN 448
A+++ PA V SLS E VPG P +GN
Sbjct: 299 AKMEMNPARVVGMSLSVNAEGGVPGAKTGPGFLRAGN 335
>09_04_0666 +
19318512-19318578,19319185-19319273,19321344-19322171,
19322264-19322419,19322507-19322881
Length = 504
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PVGTLHTSRGPSMQHGIMVTRCQ-DPSVSGEGRNLTPL 403
P L RG SM+H + ++RC P+++ E RNLT L
Sbjct: 171 PCSLLSDGRGSSMRH-LYLSRCSFHPTINLELRNLTRL 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,345,533
Number of Sequences: 37544
Number of extensions: 569508
Number of successful extensions: 1504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -