Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1842
(812 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 3.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 3.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.9
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 3.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 239 WSCSFFFLRYTLGV 280
WSC FFF+ +G+
Sbjct: 376 WSCLFFFMLILIGL 389
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 3.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 239 WSCSFFFLRYTLGV 280
WSC FFF+ +G+
Sbjct: 429 WSCLFFFMLILIGL 442
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 355 KNSAANPPSGYIRSAFGTPIS 375
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 423 KNSAANPPSGYIRSAFGTPIS 443
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 184 RNSGAAPWVGYIKFTHSIPIS 122
+NS A P GYI+ PIS
Sbjct: 423 KNSAANPPSGYIRSAFGTPIS 443
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 320 GPSMQHGIMVTRCQDPSVSGE 382
GP + + T C+D SVSGE
Sbjct: 438 GPPLPPLPLHTECEDLSVSGE 458
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 320 GPSMQHGIMVTRCQDPSVSGE 382
GP + + T C+D SVSGE
Sbjct: 438 GPPLPPLPLHTECEDLSVSGE 458
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,854
Number of Sequences: 438
Number of extensions: 5853
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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