Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1839
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z83117-2|CAE17876.1|  142|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical
           protein T20D3.5b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 798 FNIIETIFYHDYYRYFNIIYIPQLI*NLFYFT 703
           FN +    Y +YYR F++I I   + N  +FT
Sbjct: 166 FNRLRDYGYREYYRGFSVILIRNSLSNTIFFT 197


>Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical
           protein T20D3.5a protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 798 FNIIETIFYHDYYRYFNIIYIPQLI*NLFYFT 703
           FN +    Y +YYR F++I I   + N  +FT
Sbjct: 75  FNRLRDYGYREYYRGFSVILIRNSLSNTIFFT 106


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 345 LNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDT 208
           +NV T  PPAY+  + ++  +  R  N   P   I R+ ++    T
Sbjct: 466 MNVVTASPPAYSTAMAKRSSSLPREANNNPPGAPIRRSTMNGGMHT 511


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 378 QLSFRAFRNTRLNVHTVDPPAYTHRI--TRKEQASSRSGNEPKPHYDI 241
           Q S R+ R+ RLN   ++PP  +  +    +E++SS+      P YD+
Sbjct: 311 QKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRENHDPGYDL 358


>Z83117-2|CAE17876.1|  142|Caenorhabditis elegans Hypothetical
           protein M04C7.4 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 342 NVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNN 229
           NVH    PAYT   TRK    + +  E KP  D Y N+
Sbjct: 33  NVHM---PAYTQSSTRKLAFGTAATEEHKPLDDFYNNS 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,012
Number of Sequences: 27780
Number of extensions: 328312
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)