Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1839
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              26   0.48 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.8  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 567 LKKKRQNHGTNCNFSSIDI*ELQSLYLDERERNIL 671
           L KK   +    NF+ + + E+  +YLDE E N L
Sbjct: 66  LIKKFNAYDDGGNFNEVVVREIAEIYLDENEVNKL 100


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 258 KPHYDIYRNNVSARS 214
           KPHYDI+ N V+  S
Sbjct: 912 KPHYDIWGNTVNVAS 926


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 567 LKKKRQNHGTNCNFSSIDI*ELQSLYLDERERNIL 671
           L KK   +    NF+ + I E+  ++LDE   N L
Sbjct: 66  LIKKFNGYDDGGNFNEVVIREIAEIFLDENGVNKL 100


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 789 IETIFYHDYYRYFNIIYIPQLI 724
           ++ IF  D   YF  ++IP +I
Sbjct: 292 VDLIFTRDRAFYFTTVFIPGII 313


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 789 IETIFYHDYYRYFNIIYIPQLI 724
           ++ IF  D   YF  ++IP +I
Sbjct: 261 VDLIFTRDRAFYFTTVFIPGII 282


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 789 IETIFYHDYYRYFNIIYIPQLI 724
           ++ IF  D   YF  ++IP +I
Sbjct: 312 VDLIFTRDRAFYFTTVFIPGII 333


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 789 IETIFYHDYYRYFNIIYIPQLI 724
           ++ IF  D   YF  ++IP +I
Sbjct: 261 VDLIFTRDRAFYFTTVFIPGII 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,641
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)