Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1837
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    32   0.051
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    30   0.27 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   5.8  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   5.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.7  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   7.7  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 276 LIPSIPIHLYSHVVFMTVLLQSC 208
           L+PSIP   +S VVF++VLLQ+C
Sbjct: 2   LLPSIPSCSFSFVVFVSVLLQTC 24


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 381 NQDFCFIKSKSGLAWSTAPTFGPGFRNTSYFHLSPYRRGPFGLWI 515
           N  F F   K    W  AP + P + NT+  +   Y   PF  W+
Sbjct: 117 NTQFQFTSRKD--LWD-APLYSPSYNNTNLLYNFSYNANPFEFWV 158


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 513 STIRTALFCMETNESSW 463
           S+IR A+FC   N SSW
Sbjct: 11  SSIRNAVFCKFVNASSW 27


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 520 NSYASFGTSRSSEGL 564
           NSY  FGT +SS+GL
Sbjct: 89  NSYRIFGTGKSSDGL 103


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 351 SIERSGTSRLNQDFCFIKS-KSGLAWSTAPTFGPGFRNTSYFHLSPYRRGPF 503
           S E+    +LN++    +S  S L +S  P     F   S FH+S  +R PF
Sbjct: 490 SCEKVLCEKLNRNCMNAQSLMSSLGFSVPPMSYAEFLIISSFHISAVKRSPF 541


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 17  QNLPPDRKRDGLCLWVNLFAEPFVASAGFDENDARCLGY 133
           + LPP+   + L L+ N F +   + A  D     C GY
Sbjct: 301 RGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 253 VYWDTWDQRFERCAF 297
           + WD WD  F+ C F
Sbjct: 611 INWDDWDAIFQHCPF 625


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  HRIGNAMGCVCGLIYSPSPSWQAPGSTRTMPDAWGT 134
           HR+ N    VC ++ S  P W+    T+T+P+ W T
Sbjct: 348 HRLENEQ-VVCEVL-SQEPDWKCNSLTKTLPN-WKT 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,297
Number of Sequences: 5004
Number of extensions: 54037
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)