Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1837
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0845 - 21979581-21981281                                         28   4.5  
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870...    27   7.8  
04_04_1577 + 34554819-34554995,34555672-34555754,34555906-345562...    27   7.8  

>07_03_0845 - 21979581-21981281
          Length = 566

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 246 YISVLGYLGSTFRAMCVFG-VIW 311
           ++ ++  LGSTF A+C FG +IW
Sbjct: 448 HMRLIAVLGSTFVALCAFGAIIW 470


>11_04_0369 -
           16885918-16886080,16886235-16886671,16886767-16887028,
           16887050-16887353,16887771-16888166,16888531-16888579,
           16889303-16889737
          Length = 681

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +2

Query: 272 INVSSDVRFWS-H-LEGKANLASKMLR---VLNRAKRYFTPESRLLLYKEQVRPRVEYSS 436
           I +  +VR+ S H +  + ++AS  LR   VLNRA  Y      LLL  E++R  V Y  
Sbjct: 306 IEIPPNVRYLSIHCISREMSVASHSLRAIIVLNRASGYIENPEALLLGCEKLRALVFYEK 365

Query: 437 HLWAGVPKYQLLSFVSIQKRAVRIVDNSILTHRLERLGL 553
             +       L  F+   K    +    +L +RLE  G+
Sbjct: 366 EFFL---SKALEGFMGSAKLLRHLHCECLLDNRLELHGI 401


>04_04_1577 +
           34554819-34554995,34555672-34555754,34555906-34556229,
           34556347-34556602,34556951-34557031,34557106-34557213,
           34557300-34557329,34557475-34557612,34557737-34557774,
           34557858-34557957,34558194-34558268
          Length = 469

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 29  PDRKRDGLCLWVNLFAEPFVASAGFDENDARCLGYL 136
           PD    GL +W   F  P   +AGFD+N     G L
Sbjct: 128 PDPSVLGLEIWGRKFTNPIGLAAGFDKNAEAVEGLL 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,103
Number of Sequences: 37544
Number of extensions: 369285
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)