Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1837
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13636-1|BAA02800.1|  911|Homo sapiens KIAA0011 protein.               29   8.5  
BT009799-1|AAP88801.1|  911|Homo sapiens general transcription f...    29   8.5  
BC020981-1|AAH20981.1|  911|Homo sapiens general transcription f...    29   8.5  
BC000212-1|AAH00212.1|  585|Homo sapiens GTF3C2 protein protein.       29   8.5  
AC109828-1|AAY24049.1|  534|Homo sapiens unknown protein.              29   8.5  

>D13636-1|BAA02800.1|  911|Homo sapiens KIAA0011 protein.
          Length = 911

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  GCVCGLIYSPSPSWQAPGSTRTMP 119
           GC+  L + PS +W+ PG+ R  P
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAP 491


>BT009799-1|AAP88801.1|  911|Homo sapiens general transcription
           factor IIIC, polypeptide 2, beta 110kDa protein.
          Length = 911

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  GCVCGLIYSPSPSWQAPGSTRTMP 119
           GC+  L + PS +W+ PG+ R  P
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAP 491


>BC020981-1|AAH20981.1|  911|Homo sapiens general transcription
           factor IIIC, polypeptide 2, beta 110kDa protein.
          Length = 911

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  GCVCGLIYSPSPSWQAPGSTRTMP 119
           GC+  L + PS +W+ PG+ R  P
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAP 491


>BC000212-1|AAH00212.1|  585|Homo sapiens GTF3C2 protein protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  GCVCGLIYSPSPSWQAPGSTRTMP 119
           GC+  L + PS +W+ PG+ R  P
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAP 491


>AC109828-1|AAY24049.1|  534|Homo sapiens unknown protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  GCVCGLIYSPSPSWQAPGSTRTMP 119
           GC+  L + PS +W+ PG+ R  P
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAP 491


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,342,876
Number of Sequences: 237096
Number of extensions: 2019925
Number of successful extensions: 4168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4166
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)