Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1837
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 36 0.020
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 33 0.19
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 29 1.7
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 29 1.7
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 29 1.7
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 7.0
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 27 7.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 7.0
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 27 9.3
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 35.9 bits (79), Expect = 0.020
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 266 LGINVSSDVRFWSHLEGKANLASKMLRVLNRAKRYFTPESRL--LLYKEQVRPRVEYSSH 439
LG +S + F H + NLA ++ N +Y T +L LLYK +RPR+EY +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAK--FQLANIFNQYSTSNKKLMILLYKTFIRPRLEYGTV 207
Query: 440 LWAGVPKYQLLSFVSIQKRAVR 505
+ + K + S+Q R
Sbjct: 208 VSSPTKKSDEKAIESVQNAFTR 229
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 35.5 bits (78), Expect = 0.027
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 266 LGINVSSDVRFWSHLEGKANLASKMLRVLNRAKRYFTPESRL--LLYKEQVRPRVEYSSH 439
LG +S + F H NLA ++ N +Y T +L LLYK +RPR+EY +
Sbjct: 180 LGFLISEKLDFSDHWRKCINLAK--FQLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTV 237
Query: 440 LWAGVPKYQLLSFVSIQKRAVR 505
+ + K + S+Q R
Sbjct: 238 VSSPTKKSDEKTIESVQNAFTR 259
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 266 LGINVSSDVRFWSHLEGKANLASKMLRVLNRAKRYFTPESRLLLYKEQVRPRVEYSSHLW 445
LGI S + F H++ +LA + L ++ + PE L+K + P +EY S ++
Sbjct: 198 LGILTDSKLTFKPHIKKIVSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVY 257
Query: 446 AGVPKYQL 469
+ P L
Sbjct: 258 SPKPSSSL 265
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +3
Query: 258 LGYLGSTFRAMCVFGVIWRVKPIWRPKC*ESSIERSGTSRLNQDFCFIKSKSGLAWSTAP 437
LG L + F IW + ++ S + G L Q + KS S + AP
Sbjct: 2844 LGTLYNEISEFDQFAAIWERRAVFPDTMRAMSAMQLGDMELAQSY-LEKSMSSTYETLAP 2902
Query: 438 TFGPGFRNTSYFHLSPYRRGPFGLWIIQFL 527
T P + S H+SP + W+ ++
Sbjct: 2903 TINPNNTSNSEKHVSPIIDKEYDHWMEMYI 2932
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +3
Query: 258 LGYLGSTFRAMCVFGVIWRVKPIWRPKC*ESSIERSGTSRLNQDFCFIKSKSGLAWSTAP 437
LG L + F IW + ++ S + G L Q + KS S + AP
Sbjct: 2855 LGTLYNEISEFDQFAAIWERRAVFPDTMRAMSAMQLGDMELAQSY-LEKSMSSTYETLAP 2913
Query: 438 TFGPGFRNTSYFHLSPYRRGPFGLWIIQFL 527
T P + S H+SP + W+ ++
Sbjct: 2914 TINPNNTSNSEKHVSPIIDKEYDHWMEMYI 2943
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +3
Query: 258 LGYLGSTFRAMCVFGVIWRVKPIWRPKC*ESSIERSGTSRLNQDFCFIKSKSGLAWSTAP 437
LG L + F IW + ++ S + G L Q + KS S + AP
Sbjct: 2855 LGTLYNEISEFDQFAAIWERRAVFPDTMRAMSAMQLGDMELAQSY-LEKSMSSTYETLAP 2913
Query: 438 TFGPGFRNTSYFHLSPYRRGPFGLWIIQFL 527
T P + S H+SP + W+ ++
Sbjct: 2914 TINPNNTSNSEKHVSPIIDKEYDHWMEMYI 2943
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +3
Query: 258 LGYLGSTFRAMCVFGVIWRVKPIWRPKC*ESSIERSGTSRLNQDFCFIKSKSGLAWSTAP 437
LG L + F IW + ++ S + G L Q + KS S + AP
Sbjct: 2855 LGTLYNEISEFDQFAAIWERRAVFPDTMRAMSAMQLGDMELAQSY-LEKSMSSTYETLAP 2913
Query: 438 TFGPGFRNTSYFHLSPYRRGPFGLWIIQFL 527
T P + S H+SP + W+ ++
Sbjct: 2914 TINPNNTSNSEKHVSPIIDKEYDHWMEMYI 2943
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 378 LNQDFCFIKSKSGLAWSTAPTFGPGFRNTSYF 473
L FC+ KSK + P FG GF N F
Sbjct: 3 LKNIFCYEKSKKNRNFKKKPFFGCGFLNLKRF 34
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 378 LNQDFCFIKSKSGLAWSTAPTFGPGFRNTSYF 473
L FC+ KSK + P FG GF N F
Sbjct: 3 LKNIFCYEKSKKNRNFKKKPFFGCGFLNLKRF 34
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 444 GPGFRNTSYFHLSPYRRGP 500
GPG + Y+H SP RGP
Sbjct: 1536 GPGMGPSQYYHDSPQNRGP 1554
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 440 LWAGVPKYQLLSFVSIQKRAVRIVDNSILTH 532
L G+PK +SF +R +++D +IL H
Sbjct: 153 LSTGIPKQLKISFFYYPERTEKVLDGTILNH 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,579
Number of Sequences: 27780
Number of extensions: 302927
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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