Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1837
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 345  LSILDAKLALPSK*LQKRTSLETLIPSIPI 256
            +S +  + +LP +    R+SL TL+P I +
Sbjct: 1829 ISPMSEQKSLPRRGRSSRSSLRTLLPPISV 1858


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 345  LSILDAKLALPSK*LQKRTSLETLIPSIPI 256
            +S +  + +LP +    R+SL TL+P I +
Sbjct: 1825 ISPMSEQKSLPRRGRSSRSSLRTLLPPISV 1854


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 464 GISEPRPKGGSCTPREAGLALYKAK 390
           G+S   P G SC P  A  A   +K
Sbjct: 145 GLSSSAPTGSSCGPGAAAAAALLSK 169


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 423 WSTAPTFGPGFRNTSYFHLSPYRRGPFGLWIIQFL 527
           W T       FR+ S  ++SP+ R  F  W+ + L
Sbjct: 328 WITVCVLNVHFRSPSTHNMSPWVRQVFLNWMPRLL 362


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 212 PVNQMLNSRRRPKHVTDPPDPLT 144
           P   M  S  R  H T PP P T
Sbjct: 233 PDTSMAKSFVRKVHATKPPKPQT 255


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 451 GSEIPATFICLHTEE 495
           GSE  A F+C+ T E
Sbjct: 186 GSEAEAEFVCIATPE 200


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 249 YSHVVFMTVLLQSCEPNVKQ 190
           Y  ++   V L  C PNVKQ
Sbjct: 3   YFIILLALVALGVCAPNVKQ 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,209
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)