Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1836
(794 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel prot... 34 0.51
EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel prot... 34 0.51
EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel, voltage... 34 0.51
DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein ... 34 0.51
AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel ... 34 0.51
AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium ch... 34 0.51
AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium ch... 34 0.51
AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium ch... 34 0.51
AK127459-1|BAC86988.1| 238|Homo sapiens protein ( Homo sapiens ... 32 2.1
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 31 4.8
M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subu... 31 4.8
AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium ch... 31 4.8
AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel ... 31 4.8
X04393-1|CAA27981.1| 545|Homo sapiens complement C8-beta propet... 31 6.3
M16973-1|AAA51862.1| 591|Homo sapiens C8B protein. 31 6.3
BC130575-1|AAI30576.1| 591|Homo sapiens complement component 8,... 31 6.3
AL121998-1|CAC18532.1| 591|Homo sapiens complement component 8,... 31 6.3
AL833902-1|CAD38758.1| 545|Homo sapiens hypothetical protein pr... 30 8.4
AK000407-1|BAA91144.1| 310|Homo sapiens protein ( Homo sapiens ... 30 8.4
AF525164-1|AAQ08897.1| 524|Homo sapiens DERPC protein. 30 8.4
>EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel
protein.
Length = 1998
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel
protein.
Length = 2016
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel,
voltage-gated, type V, alpha (long QT syndrome 3)
protein.
Length = 2015
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein
type V alpha subunit protein.
Length = 2016
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel
alpha subunit Nav1.5 protein.
Length = 2015
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium
channel type V alpha isoform b variant protein.
Length = 1576
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 113 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 160
>AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium
channel splicing variant protein.
Length = 1962
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium
channel protein.
Length = 2016
Score = 34.3 bits (75), Expect = 0.51
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AK127459-1|BAC86988.1| 238|Homo sapiens protein ( Homo sapiens
cDNA FLJ45551 fis, clone BRTHA2037247. ).
Length = 238
Score = 32.3 bits (70), Expect = 2.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 5 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 178
KAF+K+ H ++ L +G+ + IIR R+ + G + PL G QG
Sbjct: 34 KAFNKIQHRFMLKTLNKLGIEGPCLKIIRAICDKRTANIILNGQQLEAFPLKTGTRQG 91
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 5 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 178
KAFDK+ ++ L +G+ + IIR + R+ G + PL G QG
Sbjct: 603 KAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIRLNGQKLEAFPLKTGTRQG 660
>M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subunit
protein.
Length = 2016
Score = 31.1 bits (67), Expect = 4.8
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ A S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTARESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium
channel type V alpha subunit jejunal variant protein.
Length = 2015
Score = 31.1 bits (67), Expect = 4.8
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ A S +HHT LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTARESESHHTSLLVPWPLRRTSAQGQP-SPGTS 581
>AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel
alpha subunit protein.
Length = 2015
Score = 31.1 bits (67), Expect = 4.8
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 RQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE-PLFSISSRGNPLLPTTS 156
R+ L DF ++ AG S +H T LLV PL S++G P P TS
Sbjct: 534 RRDLGSEADFADDENSTAGESESHRTSLLVPWPLRRTSAQGQP-SPGTS 581
>X04393-1|CAA27981.1| 545|Homo sapiens complement C8-beta propetide
/map='1p36.2- p22.1'on) protein.
Length = 545
Score = 30.7 bits (66), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 481 GLTKESNRGCEIPPPNTGGNPCGASPLKE 395
G K R C PPP GG+PC + P E
Sbjct: 513 GRRKTRQRQCNNPPPQNGGSPC-SGPASE 540
>M16973-1|AAA51862.1| 591|Homo sapiens C8B protein.
Length = 591
Score = 30.7 bits (66), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 481 GLTKESNRGCEIPPPNTGGNPCGASPLKE 395
G K R C PPP GG+PC + P E
Sbjct: 559 GRRKTRQRQCNNPPPQNGGSPC-SGPASE 586
>BC130575-1|AAI30576.1| 591|Homo sapiens complement component 8,
beta polypeptide protein.
Length = 591
Score = 30.7 bits (66), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 481 GLTKESNRGCEIPPPNTGGNPCGASPLKE 395
G K R C PPP GG+PC + P E
Sbjct: 559 GRRKTRQRQCNNPPPQNGGSPC-SGPASE 586
>AL121998-1|CAC18532.1| 591|Homo sapiens complement component 8,
beta polypeptide protein.
Length = 591
Score = 30.7 bits (66), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 481 GLTKESNRGCEIPPPNTGGNPCGASPLKE 395
G K R C PPP GG+PC + P E
Sbjct: 559 GRRKTRQRQCNNPPPQNGGSPC-SGPASE 586
>AL833902-1|CAD38758.1| 545|Homo sapiens hypothetical protein
protein.
Length = 545
Score = 30.3 bits (65), Expect = 8.4
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 414 PHGFPPVLGGGISHPRLLSLVNPYPGPG---RSSTWALP 521
P G P G +S PR L+ P PGPG T ALP
Sbjct: 120 PRGMNPTGTGAVSFPRPGGLLGPGPGPGPTLNPRTGALP 158
>AK000407-1|BAA91144.1| 310|Homo sapiens protein ( Homo sapiens
cDNA FLJ20400 fis, clone KAT00587. ).
Length = 310
Score = 30.3 bits (65), Expect = 8.4
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 414 PHGFPPVLGGGISHPRLLSLVNPYPGPG---RSSTWALP 521
P G P G +S PR L+ P PGPG T ALP
Sbjct: 99 PRGMNPTGTGAVSFPRPGGLLGPGPGPGPTLNPRTGALP 137
>AF525164-1|AAQ08897.1| 524|Homo sapiens DERPC protein.
Length = 524
Score = 30.3 bits (65), Expect = 8.4
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 414 PHGFPPVLGGGISHPRLLSLVNPYPGPG---RSSTWALP 521
P G P G +S PR L+ P PGPG T ALP
Sbjct: 99 PRGMNPTGTGAVSFPRPGGLLGPGPGPGPTLNPRTGALP 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,869,024
Number of Sequences: 237096
Number of extensions: 3295050
Number of successful extensions: 12597
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12591
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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