Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1833
         (562 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   2e-04
UniRef50_A6QZE2 Cluster: Putative uncharacterized protein; n=1; ...    36   0.65 
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   3.4  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   4.6  
UniRef50_A4VD99 Cluster: Putative uncharacterized protein; n=1; ...    32   8.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 549 FLLLRCVDELTAHLVLSGYWSP 484
           FLLLR VDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A6QZE2 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 227

 Score = 35.9 bits (79), Expect = 0.65
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -3

Query: 203 KLVPASEIRT--PVHRSNAPDVLSFMRSLHYETSVMHVELSFTKVVSVY 63
           + V  S+IR   P+H   AP  +SF+R L   T+  H+E+S+T  + +Y
Sbjct: 28  RAVHISQIRPSDPIHMGLAPHEISFLRLLEAVTNGSHMEISYTGTIVLY 76


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -1

Query: 412 LPRPSNRNASLLHGRNRRGGGTYPCGLTRG 323
           LPRP  R A    G  R GGGT P G +RG
Sbjct: 192 LPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 353 WHLPVRTHKRSYHQ 312
           W+LP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A4VD99 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 210

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = -2

Query: 342 RADSQEVLPPVITQIIILRVLIFIARCYSFIVEVNREHLLSTYFIRKIGTRQRDSNTSAS 163
           R D +E    +I Q I L +LIF    ++F+   +  +LL   F++KI  RQR   +   
Sbjct: 85  RFDYREQKKELIYQNI-LSLLIFFQIYHNFVDFTHTFNLLGFAFLQKIIERQRFKYSITK 143

Query: 162 LECTGRLILYAEFTLRNQ 109
           + C  + IL+++  ++NQ
Sbjct: 144 ISCFFQ-ILFSDVIIKNQ 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,707,509
Number of Sequences: 1657284
Number of extensions: 11998358
Number of successful extensions: 29423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29416
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)