Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1832
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   2.3  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   7.1  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   7.1  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.4  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = -3

Query: 395 SSFLRSTISAPYLPTDPLSTSKKYACLLFSTASFDLGEAIAW*GTSRPF----PMSSLA- 231
           SSF  +T+ A  LP+  LS           +A F L E+ +   T   F     M SL+ 
Sbjct: 182 SSFSYNTVGAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFTPSSFIESANMESLSI 241

Query: 230 PSTIPHGAIPMLTTRPARWDLSNCNAS 150
           PS     +I  + TRP+R +++  N+S
Sbjct: 242 PSRRRPSSIAPIGTRPSRKEIAFSNSS 268


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 437 YILYCLKWETTIASYS*KSSFTGGRTSFKSTRVGTTT 547
           YI+    + TTI  YS K  FTG + +FK+T V   T
Sbjct: 219 YIISTSGYLTTI-EYSGKGYFTGKKNTFKATIVNAKT 254


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 647 GGAFTL*MSMGQYPLNTRWAVSSSTHL 727
           G  +   M +  YP   RWAV+++T++
Sbjct: 911 GDEYKAKMEINDYPQQARWAVTNNTNI 937


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 14  KEAKQTSIYSPNSRKCSEKVCSKPLKQPGRGY 109
           K A  T IY PN R+ +  V  KP   P  GY
Sbjct: 155 KMASATPIYKPNQRRIAASVPDKP---PPPGY 183


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 260 SRPFPMSSLAPSTIPHGAIPMLTTRPARWDLSNCN 156
           S P   +S+ PS+   G  P+L  +P+  DLSN N
Sbjct: 134 SVPSNFNSMFPSSKQEGPSPLLDNQPSS-DLSNFN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,963
Number of Sequences: 5004
Number of extensions: 71244
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)