Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1832
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 30 1.8
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77... 29 3.2
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601... 29 5.6
10_08_0072 - 14655379-14656608 28 7.4
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 28 7.4
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 9.7
07_03_0768 + 21368058-21368624 28 9.7
07_03_0349 - 17051786-17052376 28 9.7
03_05_0352 + 23395976-23396040,23396220-23396286,23396753-233971... 28 9.7
01_03_0251 + 14247293-14249926 28 9.7
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 341 STSKKYACLLFSTASFDLGEAIAW*GTSRPFPMSSLAPSTIPHGAIPMLTTRPA 180
+ ++YA A F A+ G R F ++LAP T P G+ P+LT P+
Sbjct: 48 AADRRYALASAHAAYFRSLAAVG--GALRRFAAAALAPGTPPSGSSPVLTLPPS 99
>01_01_0102 +
769442-770159,770710-770805,771340-771363,771470-772542
Length = 636
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 91 TTGAWIFTGGTN--TGVTRQVGDALQLERSQRAGRVVSIGIAPWGIVEGANELIGKGRDV 264
+TG +FT T+ T + +Q + + RVV+I I P+G + + + +G V
Sbjct: 216 STGETVFTWYTSNVTSICQQCEREVWITVGGTTVRVVTISIRPFGARDALDSAVARGPRV 275
Query: 265 PYHAIASPRSKLAVLNNRHAYFLLVDNGSVGRYGAEIVLR 384
A S VL+ A L + S RY EI L+
Sbjct: 276 TIIAATSSVGTFIVLSLIVATALYISLKS--RYNEEIHLK 313
>08_01_0684 +
6009474-6009582,6009715-6009904,6011412-6011483,
6011644-6011715,6011806-6011877,6012163-6012234,
6012283-6012354,6012479-6012550,6012634-6012705,
6013112-6013183,6013275-6013349,6013453-6013524,
6013619-6013684,6013752-6013777,6014179-6014558,
6014642-6014840,6014910-6015068,6015569-6015613,
6015742-6015973,6016053-6016203,6016306-6016665
Length = 879
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 467 TIASYS*KSSFTGGRTSFKSTRVGTTTPPISAVKQ 571
T +Y + F GG TS+ ++ G+TTP +S K+
Sbjct: 825 TKPNYITEWQFRGGNTSYVTSHSGSTTPKLSRQKE 859
>10_08_0072 - 14655379-14656608
Length = 409
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = -3
Query: 509 YHQ*KMTSMSKTRWLFPILSSTKCK-YSQGCSFWAAMYFSSFLRSTIS---APYLPTDPL 342
YH K+ S+TR LFP ++ K + ++ G W Y+ + + +L D
Sbjct: 42 YHLLKIDDYSRTRDLFPTSTALKSRAFTIGGHRWRIQYYPNGNTPNCGDYISLFLHLDEE 101
Query: 341 STSKKYACLLFSTASFDLGEAI 276
T + YA L F +LG+ +
Sbjct: 102 VTREVYAQLQFRLLDDELGDKL 123
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 610 LQRLPHPSNRNALLLHGRNRRGCGTYSRGLK 518
LQR P N + L RN+ CG Y+ GL+
Sbjct: 519 LQRTPRAQNLRLMELVPRNKLFCGVYAVGLR 549
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 598 VAVVTIPETLELISQGGWRIYVVDVYGPVPT 690
VA VT L + ++GG +++++ V GPV T
Sbjct: 554 VAAVTTLNFLRIFTEGGLQMHILSVGGPVVT 584
>07_03_0768 + 21368058-21368624
Length = 188
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 312 QQTRILLAGRQRICRQVRSRDRATEETG 395
QQ ++AGR+R CR+ R + +A TG
Sbjct: 131 QQEEYVVAGRRRPCRRRRGKGKACAGTG 158
>07_03_0349 - 17051786-17052376
Length = 196
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 639 SRWVAHLRCRCLWASTHLTPDGL*ARPLIYA*KKYKYH 752
S + L CRC WAST P L R L+ + Y+
Sbjct: 23 SAYTVGLLCRCCWASTTSPPACLRRRRLVLPPTRLAYY 60
>03_05_0352 +
23395976-23396040,23396220-23396286,23396753-23397122,
23397229-23397401,23397751-23397996
Length = 306
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 65 EKVCSKPLKQPGRGYSLAV 121
EKVC KP+ GR Y +A+
Sbjct: 125 EKVCEKPVDMSGRSYDIAM 143
>01_03_0251 + 14247293-14249926
Length = 877
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 379 LRRKLEKYIAAQKLHPCEYLHFVLLKMGN 465
+ ++L +Y AAQ L P +LH LLK G+
Sbjct: 7 ISQQLTRYAAAQALLPGAHLHASLLKSGS 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,582,235
Number of Sequences: 37544
Number of extensions: 524353
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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