Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1830
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    29   0.78 
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    28   1.8  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.1  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    27   4.1  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   7.2  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    25   9.6  

>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 137 KNRTLERKHIEKLILAQKDELFGGTPEDYLSH 232
           +NR  E K  EKL L+QK++LF   P  Y+ H
Sbjct: 89  RNRITESK--EKLSLSQKEKLFQNLPTVYILH 118


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +2

Query: 71  LQNERNKCSFNVRELTEFIDGGKNRTLERKHIEKLILAQKDELFGGTPEDYLSHKEKYER 250
           L +E N+CS  + E+ EF+    N  +E  ++E  I+  +  +   T +DY++ K + E 
Sbjct: 217 LMSENNECSQAIFEIPEFM-SSINECIE--NLEYFIVTDQPSVPPATEKDYVT-KPRIEA 272

Query: 251 AIQTNVI 271
           +I+   I
Sbjct: 273 SIRIKKI 279


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 71  LQNERNKCSFNVRELTEFIDGGKNRTLERKHIEKLILAQKDELFGGTPEDY 223
           + NE NK + N ++ + F +GG    L+R  +  LI  ++      T ED+
Sbjct: 1   MDNENNKNTKNSQQDSSFSEGGIRELLDRLALRSLIEKEEAAAPPKTYEDF 51


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 23  SDVGNNKIRKMNVNKDLQNERNKCSFNVRELTEFIDGGKNRTLERKHIE 169
           SDV  ++    N  K LQ    K      E T  IDGGK    E+   E
Sbjct: 162 SDVEEDEFEPENTRKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAE 210


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 112 FSYIKTAFVSFILQIFVYIHFSDFIITYVRPL 17
           +++ +    + +LQIF  I FSD  + Y+ P+
Sbjct: 14  YTFYRLNGANMLLQIFCVIMFSDLEMDYINPI 45


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 650 VVVAQLHTKGQCHGIHSFIVQVRDEETHCP 739
           ++VA    KG C GIHS I ++   E H P
Sbjct: 97  LMVACSSDKGLCGGIHSSISRLIRRELHDP 126


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 343 EYIPVIREVTTICISHKILNNFQNNNI 263
           ++ P IRE++ +C    + NN +N  I
Sbjct: 364 DWNPYIREISVLCTRLLLQNNIENQKI 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,712
Number of Sequences: 5004
Number of extensions: 75185
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)