Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1830
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...   153   2e-37
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478...   100   2e-21
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    68   1e-11
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    35   0.088
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941...    33   0.35 
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    30   1.9  
11_06_0401 - 23139276-23140304                                         30   2.5  
02_05_0192 + 26602247-26602617,26602701-26603016                       28   7.6  

>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score =  153 bits (370), Expect = 2e-37
 Identities = 72/130 (55%), Positives = 90/130 (69%)
 Frame = +2

Query: 350 LLNFVVSREGTPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFI 529
           LL   V + G    LH+ MF+P    Q  EEQQ +WLP A+   IIG YAQTELGHG+ +
Sbjct: 93  LLRLYVDQPGY-VDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNV 151

Query: 530 RGLETTATYDAATKEFVLHSPTVTSYKWWPGALGHTANYCVVVAQLHTKGQCHGIHSFIV 709
           +GLETTAT+D  T EFV+HSPT+TS KWWPG LG  + + VV A+L T+G+ +GIH FIV
Sbjct: 152 QGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIV 211

Query: 710 QVRDEETHCP 739
           Q+R  E H P
Sbjct: 212 QLRSLEDHSP 221


>06_02_0320 -
           14347195-14347443,14347573-14347674,14347747-14347851,
           14347938-14348084,14348171-14348290,14348743-14348878,
           14349198-14349328,14350854-14350928,14351040-14351139,
           14351213-14351385,14351474-14351581,14351674-14351791,
           14353477-14353970
          Length = 685

 Score =  100 bits (239), Expect = 2e-21
 Identities = 43/111 (38%), Positives = 68/111 (61%)
 Frame = +2

Query: 392 LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAATK 571
           +HF ++         +    +WL    N  I G ++ TELGHG+ +RG+ET ATYD  T+
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKTR 219

Query: 572 EFVLHSPTVTSYKWWPGALGHTANYCVVVAQLHTKGQCHGIHSFIVQVRDE 724
           EFV+++P  ++ K+W G   + A + +V AQLH  G+  G+H+F+ Q+RDE
Sbjct: 220 EFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRDE 270


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
 Frame = +2

Query: 473 NCNIIGSYAQTELGHGTFIRGLETTATYDAATKEFVLHSPTVTSYKWWPGALGHTANYCV 652
           N +  G +A TEL HG+ ++ L+TTAT+D  T EF++++P   + KWW G       +  
Sbjct: 182 NLDYPGCFAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFAT 241

Query: 653 VVAQ----LHTKG---QCHGIHSFIVQVRDEETH 733
           V A+    L  KG      GIH+FIV +RD +T+
Sbjct: 242 VFARLILPLQGKGGDPADMGIHAFIVPIRDLDTN 275


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 605 YKWWPGALGHTANYCVV-----VAQLHTKGQCHGIHSFIVQVRDEETH 733
           +K WP   G   +Y +         LHT   C GIH F VQ+R +E H
Sbjct: 560 HKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMH 607


>06_01_1137 +
           9412230-9412378,9412549-9412634,9413417-9413496,
           9413826-9413881,9414038-9414086,9414692-9414841,
           9414993-9415088,9415442-9415555,9415655-9415785,
           9416171-9416408,9416603-9416656,9417100-9417117,
           9417906-9418722,9418797-9418846
          Length = 695

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 17  QRSDVGNNKIRKMNVNKDLQNERNKCSFNVRELTEFIDGGKNRTLERKHIEKL--ILAQK 190
           Q++ +  N+ R   + ++L+N     + ++RE      G  NR   +  +E+   IL+ +
Sbjct: 247 QQTQIARNEQRTSQLMEELENLEETLNDSIRESLGARTGNSNRGSHKASLEEEDDILSDE 306

Query: 191 DELFGGTPEDYLSHKEKYERAIQT 262
           D+ +  T +   SHK   E+ ++T
Sbjct: 307 DDFYDRTKKKSSSHKSS-EQQVET 329


>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 437 EEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTAT 553
           E Q+ ++LP       +G +A TE  HG+    L TTAT
Sbjct: 148 EVQKQKYLPSLAQLTAVGCWALTEPNHGSDASSLITTAT 186


>11_06_0401 - 23139276-23140304
          Length = 342

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 337 CTHNVAQFRGLPRRNSLCAALHDVFTCVLKSG 432
           C   V +  G P  ++LC   HD+F C+L +G
Sbjct: 162 CDVTVVKRDGPPTMSTLCPVEHDMFRCLLDTG 193


>02_05_0192 + 26602247-26602617,26602701-26603016
          Length = 228

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 615 GPGHWVTRLITAWLWRSCIPRANVMVFIR 701
           G G W  RL+ AW WR+   R      +R
Sbjct: 72  GRGSWRRRLLAAWWWRATAQRRFAEAVVR 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,069
Number of Sequences: 37544
Number of extensions: 533760
Number of successful extensions: 1138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)