Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1829
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 281 6e-76
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 71 1e-12
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 54 1e-07
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 53 2e-07
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 42 4e-04
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 36 0.037
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 31 1.4
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.4
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 3.2
04_01_0376 - 4929447-4929731 29 5.6
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 7.4
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 28 7.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 281 bits (688), Expect = 6e-76
Identities = 141/251 (56%), Positives = 170/251 (67%), Gaps = 8/251 (3%)
Frame = +2
Query: 59 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 229
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 230 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 394
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 395 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 574
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 575 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHH 754
NTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNTGHPVF T YGKI VNIC+GRHH
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265
Query: 755 VLNWMMFGQNG 787
LNW+ FG NG
Sbjct: 266 PLNWLAFGLNG 276
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 70.9 bits (166), Expect = 1e-12
Identities = 40/134 (29%), Positives = 72/134 (53%)
Frame = +2
Query: 341 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 520
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 521 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPV 700
VI S E + ++ +N+ +I G +G +RK+HIP + E Y+ G+TG
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147
Query: 701 FATRYGKIAVNICF 742
F T+Y I V IC+
Sbjct: 148 FKTKYATIGVGICW 161
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 54.0 bits (124), Expect = 1e-07
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Frame = +2
Query: 305 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 475
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 476 -PTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----I 637
P+ + + E+A + +V + E+ + L+NT V G + GKHRK H I
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDI 167
Query: 638 PRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF 742
P F ES G V T G+I + IC+
Sbjct: 168 PGKITFKESKTLTAGQ-DLTVVDTDVGRIGIGICY 201
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 53.2 bits (122), Expect = 2e-07
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Frame = +2
Query: 383 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 556
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 557 HSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFATRYGK 721
S L+NT VI G + KHRK H+ + GD F ES+ + G + T G+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDVGR 127
Query: 722 IAVNIC 739
I + IC
Sbjct: 128 IGIGIC 133
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 42.3 bits (95), Expect = 4e-04
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Frame = +2
Query: 323 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 469
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 470 D--GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPR 643
D GP T L LA KY + +V ++ER L+NT + G +GKHRK +
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK--VMP 161
Query: 644 VGDFNESNYYMEGNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFGQ 781
G + +G+T PV+ T GKI IC+ R +L M+ +
Sbjct: 162 TGLERVFWGFGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYAK 207
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 35.9 bits (79), Expect = 0.037
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 473 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGD 652
GP T L +A KY + +V ++ER+ L+ + + G +GKHRK +P +
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK-LMPTALE 169
Query: 653 FNESNYYMEGNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFGQ 781
+ +G+T PV+ T GKI IC+ + +L ++G+
Sbjct: 170 -RIIWGFGDGST-IPVYDTPLGKIGALICWENKMPLLRTALYGK 211
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 548 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATR 712
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAV-DSP 226
Query: 713 YGKIAVNICF 742
+G++ + +C+
Sbjct: 227 FGRLGLTVCY 236
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 398 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 577
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 578 TAVVISDTGNVIGK 619
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 474 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 364
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 725 RSCRIWSQIQDGRCYLPCSSW 663
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 447 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 316
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 778 SEHHPVQDVVPSE-ADVHRDLAVSGRKYRMAGVTFHVVV 665
+E HP+ DV+PSE +V D + R MAG H +V
Sbjct: 282 AEVHPIDDVMPSEVVEVKVDDEETNRTDEMAGDGDHAMV 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,434,705
Number of Sequences: 37544
Number of extensions: 498863
Number of successful extensions: 1472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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