Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1829
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 263 9e-71
Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical ... 29 3.8
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical ... 28 6.6
Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.8
U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoy... 28 8.8
U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoy... 28 8.8
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 263 bits (645), Expect = 9e-71
Identities = 128/244 (52%), Positives = 160/244 (65%), Gaps = 2/244 (0%)
Frame = +2
Query: 62 LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 235
+E+ + L G L+E RI +GR L+ SSI + A+ EQ
Sbjct: 11 VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67
Query: 236 TRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 415
TR PR+V+V +Q+ I PT V EQ+ AI +V +I+ A G N+I QE W MPF
Sbjct: 68 TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127
Query: 416 AFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVIS 595
AFCTRE+ PW EFAES GPTT FL +LA+K+ +VI+S ILERDE+ D++WNTAVVIS
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVIS 187
Query: 596 DTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMF 775
TG VIG+ RKNHIPRVGDFNES YYME GHPVF T+YG+I +NIC+GRHH NWMM+
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMY 247
Query: 776 GQNG 787
NG
Sbjct: 248 ALNG 251
>Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1058.6 protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.005
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Frame = +2
Query: 317 KKAIFNKVKKIIDVAGQEGVNIICFQEL-------WN-MPFAFCTREKQPWCEFA---ES 463
K A KVKK ++ A G ++ F E WN TR + EF E+
Sbjct: 16 KPATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRTPEGRKEFKRYFEN 75
Query: 464 A--EDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 637
A E+G + + LA + + IV ++ER+ + L+ + S +G +GKHRK +
Sbjct: 76 AIEENGEESKLIESLAAQNNIHIVIGVVERE---ASTLYCSVFFYSPSG-YLGKHRKL-L 130
Query: 638 PRVGDFNESNYYMEGN-TGHPVFATRYGKIAVNICF 742
P E + +G+ + PVF+T GKI IC+
Sbjct: 131 PTA---LERCVWGQGDGSTMPVFSTSVGKIGSAICW 163
>Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical
protein C37A5.1 protein.
Length = 512
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 624 RCFPITFPVSLITTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 478
+C P+TF ++ T + F+++ IE+T I IA L+ + V++
Sbjct: 75 KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124
>Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical
protein C34E7.3 protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 498 SRRKVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATS 352
SR K+ +S+ + HG + +V+ AK F + +++ +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245
>AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical
protein F13B6.1 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 673 VVVGFVKIADSRNVVLAMFPDHVSGVTNYNR 581
V+ GFV + DS+++V D + G+TNY++
Sbjct: 156 VLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQ 186
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 320 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 454
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 320 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 454
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical
protein F29A7.1 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 572 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 676
WN + + D ++ + H+ R GD+ NY++
Sbjct: 266 WNKKIAMKDVPFIVYSPQFEHVIRGGDWENENYFL 300
>Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical
protein K02A11.1b protein.
Length = 480
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 347 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLREL 502
I+ + Q G N++ NMP+ C E+ +E A G T +++ E+
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEM 189
>Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical
protein K02A11.1a protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 347 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLREL 502
I+ + Q G N++ NMP+ C E+ +E A G T +++ E+
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEM 189
>U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform b protein.
Length = 434
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 775 EHHPVQDVVPSEADVHRDLAVSGRKY-RMAGVTFHVVVGFVKIAD 644
+ HPV + ++ + +D+++ G KY MA F +G +I D
Sbjct: 39 QDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIED 83
>U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform a protein.
Length = 458
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 775 EHHPVQDVVPSEADVHRDLAVSGRKY-RMAGVTFHVVVGFVKIAD 644
+ HPV + ++ + +D+++ G KY MA F +G +I D
Sbjct: 63 QDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIED 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,595,734
Number of Sequences: 27780
Number of extensions: 409915
Number of successful extensions: 1287
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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