Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1828
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 219 5e-58
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 200 2e-52
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 49 8e-07
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 44 2e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 37 0.003
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 36 0.006
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 2.2
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.2
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 5.2
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 6.9
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 9.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.1
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 219 bits (534), Expect = 5e-58
Identities = 108/242 (44%), Positives = 158/242 (65%)
Frame = +2
Query: 2 LLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYG 181
LLLGAG+SGK+TI+KQM++++ GF+ KQYR +++ N I SL +L AM N +
Sbjct: 78 LLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMDNSNVSLL 137
Query: 182 NRDRESDGKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYF 361
+ + + V + EPFS E+ A+ L D+ ++ L D+ Y+
Sbjct: 138 PENEKY--RAVILRKHTSQPNEPFSPEIYEAVHALTLDTKLRTVQSCGTNLSLLDNFYYY 195
Query: 362 LDDLDRLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCF 541
D +DR+ Y P++QDIL R+KTTGI E F +++ FDVGGQRSER+KWIHCF
Sbjct: 196 QDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCF 255
Query: 542 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 721
E+VTA++F V+++ YDQ L ED + N+MQE+L L+DSICN+ WF+++++ILFLNK DLF+
Sbjct: 256 ENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFK 315
Query: 722 EK 727
K
Sbjct: 316 RK 317
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 200 bits (488), Expect = 2e-52
Identities = 104/246 (42%), Positives = 159/246 (64%), Gaps = 4/246 (1%)
Frame = +2
Query: 2 LLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYG 181
LLLGA +SGKSTI KQ+KI++++GF+ E+ + PV+ N ++S +++ + GI
Sbjct: 38 LLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIRRNLLESAKTLVKIIVQKGI--- 94
Query: 182 NRDRESDGKMVFDVIQRMEDT--EPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAK 355
+ + G ++I++ T E + + A+ LW+ + V+ C N+ L DSA
Sbjct: 95 --NLDPLGTHNCEIIEKFNPTPGELINANIGQAITSLWSANSVRSCT-YGNDSVLIDSAP 151
Query: 356 YFLDDLDRLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 535
YF D + ++ Y PT DILR+R T GI E+ F+ +L ++FDVGGQR+ER+KWI+
Sbjct: 152 YFFSRADEICSRHYVPTIDDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIY 211
Query: 536 CFEDVTAIIFCVAMSEYDQVLHEDET--TNRMQESLKLFDSICNNKWFTDTSIILFLNKK 709
CFE+V +IIFCV++++YD+ L+E NR+ ES+ LFDSI N++WF +SIILFLNK
Sbjct: 212 CFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKF 271
Query: 710 DLFEEK 727
DLF +K
Sbjct: 272 DLFRKK 277
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 48.8 bits (111), Expect = 8e-07
Identities = 28/97 (28%), Positives = 49/97 (50%)
Frame = +2
Query: 425 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 604
T + T G ++N++F ++DVGGQ R W H F++ IIF V ++ +++
Sbjct: 44 TTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEA 103
Query: 605 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 715
E RM +L D++ +++F NK+DL
Sbjct: 104 HEELQRMLNEDELRDAL----------LLVFANKQDL 130
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +2
Query: 431 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 610
+ T G ++KN+ F ++DVGGQ R W H F +IF V +
Sbjct: 50 IPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVV----------DSA 99
Query: 611 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 715
+NR+ E+ + I +++ D +++ NK+DL
Sbjct: 100 DSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +2
Query: 470 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 649
+ L F ++D+GGQ++ R W + FE AII+ V D L +E N +QE L
Sbjct: 58 EGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVV--DSLDD-LRLEECRNTLQELLV--- 111
Query: 650 SICNNKWFTDTSIILFLNKKDL 715
+ TSI++ NK D+
Sbjct: 112 ----EEKLLFTSILVLANKSDV 129
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +2
Query: 338 LNDSAKYFLDDLDRLGAKDY-QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRS 514
+N AK LD G + D L T + N+ F FD+GG +
Sbjct: 17 VNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQ 76
Query: 515 ERKKWIHCFEDVTAIIFCVAMSEYDQV 595
R+ W F +V I++ V +++++
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCCDFERL 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 506 QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 664
+R+E + +CF+ + ++ ++S L DE N M L LFDS+ ++
Sbjct: 3730 KRTELPELSYCFKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLFDSLLSS 3782
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 464 SFKNLNFKLFD 496
SFKNLNFKLFD
Sbjct: 553 SFKNLNFKLFD 563
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 309 SALVVPTSTNSTTPLNISWTTSTG*EQRITSPPN--KIS*GLESKRLE 446
S L+ P + S++P+ +S +++ +QR +P N S ++SK+LE
Sbjct: 130 SPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLE 177
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = -2
Query: 337 LVLVGTTKALLNARVGPEPFHRGEKLLTERFRVLHPLN-----HVEHHLTIAFSVS 185
L+++ T ++L A +GP +KL ERF++L +N +++ ++ AFS+S
Sbjct: 1469 LMIISTVDSVL-ATIGPTITGWMKKLDHERFKILAGINLCNLIYLKRYIKYAFSIS 1523
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 610 FILVQHLIIFRHGNTEYDRGHVLEAMNPFL 521
FIL L+IF G TE R ++ +A + F+
Sbjct: 251 FILAPELVIFSAGETEAPRRNIPKATSRFI 280
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 308 PERQSRPRAFSSRREAPH*TVPCPP 234
P R S ++ S+ + PH T+P PP
Sbjct: 275 PRRPSATKSCSAAVDCPHTTIPKPP 299
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 12 VLANRARVL*SNR*KLSMKVDSQMKTSNSTGPWS 113
+LAN R++ SN K+ D Q + S GPW+
Sbjct: 1 MLANALRLV-SNSKKIKYDYDIQKENSVQVGPWT 33
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 9.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 318 VVPTSTNSTTPLNISWTTSTG*EQRITSPPNKIS*GLESKRLESSKYISPSKTSISNCST 497
V +S +STT + S + S+ TSP + S S SS S S +S S+ S+
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 498 WAGS 509
+ S
Sbjct: 187 SSSS 190
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/41 (19%), Positives = 20/41 (48%)
Frame = +2
Query: 536 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 658
CF + + C A + + +++HE + + ++ K +C
Sbjct: 383 CFNSMNPLTKCAAQTSWIRLIHEFSLSETLTQATKRLTLLC 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,648
Number of Sequences: 5004
Number of extensions: 72044
Number of successful extensions: 267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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