Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1827
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   142   4e-35
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  142 bits (345), Expect = 4e-35
 Identities = 79/195 (40%), Positives = 100/195 (51%), Gaps = 2/195 (1%)
 Frame = +3

Query: 18  LIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 191
           +IR EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A
Sbjct: 41  IIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVA 100

Query: 192 FPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 371
           +PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L 
Sbjct: 101 YPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLT 160

Query: 372 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 551
           GISS                   S  Q+PLF  A+ IT+          AG + +L +DR
Sbjct: 161 GISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDR 220

Query: 552 NLNTSFFDPAGGGDP 596
           NLNTSF+ P GGGDP
Sbjct: 221 NLNTSFYAPEGGGDP 235



 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 32/53 (60%), Positives = 42/53 (79%)
 Frame = +1

Query: 595 PILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKKLFGCLGIIYAILAI 753
           P+LYQHLF FFGHPEVYILI+P FG++SHII      K +FG  G+++A+L+I
Sbjct: 235 PVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSI 286


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 TPTPLPYIINFKKNCRKWCRNRMNS 295
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,520
Number of Sequences: 5004
Number of extensions: 43502
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)