Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1826
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 217 CCAKFPVLLIHKVGVSVRHV*W*LVTFL 300
           C  KFPV L  K+GV   H  W +V F+
Sbjct: 422 CTRKFPVYLSVKLGVITDHYRWFIVVFI 449


>Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +3

Query: 285 TGYLPW*TSATPLPIAIQAIFFKITLT*SSRINSKVLLVHVINTVISILTPTHNWN*VYL 464
           T  LP  + A  LP+A+  I  +I L    R  S    +H+ + ++SILT  H    V+ 
Sbjct: 34  TSTLPALSRAHALPLALLCIL-RIVLIFDFRNFS----IHIAHILLSILTAIHTMTEVFF 88

Query: 465 YDLQLT*SLICTQIELN 515
           Y       +  T++ LN
Sbjct: 89  YQSMSYGIVTVTEVTLN 105


>Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +3

Query: 285 TGYLPW*TSATPLPIAIQAIFFKITLT*SSRINSKVLLVHVINTVISILTPTHNWN*VYL 464
           T  LP  + A  LP+A+  I  +I L    R  S    +H+ + ++SILT  H    V+ 
Sbjct: 34  TSTLPALSRAHALPLALLCIL-RIVLIFDFRNFS----IHIAHILLSILTAIHTMTEVFF 88

Query: 465 YDLQLT*SLICTQIELN 515
           Y       +  T++ LN
Sbjct: 89  YQSMSYGIVTVTEVTLN 105


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 496 VHRLSSI*FNAYVPIG*TGLTD*YRSLKSKDEVVALRPRIDCSDIAESVETL-SIARRIQ 672
           +H+L+    + +V +G +  T+  + +++  E V    +ID +D  ESVET+  I RR++
Sbjct: 388 LHQLAEFFEHGFVKMGESQKTNFVKWVRNLSETVE---KIDLNDTTESVETIQQIIRRVK 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,188
Number of Sequences: 27780
Number of extensions: 325125
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)