Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1825
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   2.4  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.2  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   7.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   9.7  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 47  GGRAHSPPGVKWLLEPIDIYN 109
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 271 ITQIIILRVSFLLHDVIPSPWKSIVNI 351
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 HDVIPSPWKSIVNIC*VRISNSNTAVVSLDTIAPDVLF 423
           HD+    WKS ++   +  S S+ A++ LD I   V F
Sbjct: 112 HDISGKDWKSFIHDVNMACSFSDVALMGLDQILNLVSF 149


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 403 SYLAIQQRCSNSKYVLNKCSRLTSTVKE*H 314
           ++L I Q C NS   L KC+  TS ++  H
Sbjct: 375 TWLKIIQLCFNSMNPLTKCAAQTSWIRLIH 404


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 228 GTYPCGLTRGPITSNYANYNI 290
           GT    +++ P+TS  ANYN+
Sbjct: 355 GTTWLSISQNPLTSQLANYNV 375


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 56  AHSPPGVKWLLEPIDIYNVNAPPTLR 133
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 238 RADSQEVLSPVITQIIILRVSFLLHDVIPSP-WKSIVNIC*VRISNSN 378
           +AD    ++ V+T +++  + F  HD + S   K I  +   RI  SN
Sbjct: 695 KADFDPYVNEVLTSVVLPGLKFFFHDGVRSACCKCIPQLLNARILASN 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,262
Number of Sequences: 5004
Number of extensions: 40143
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)