Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1825
         (458 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88879-1|AAC34134.1|  904|Homo sapiens Toll-like receptor 3 prot...    29   7.7  
DQ445682-1|ABE01399.1|  904|Homo sapiens Toll-like receptor 3 is...    29   7.7  
BC096335-1|AAH96335.1|  904|Homo sapiens toll-like receptor 3 pr...    29   7.7  
BC096334-1|AAH96334.1|  904|Homo sapiens toll-like receptor 3 pr...    29   7.7  
BC096333-1|AAH96333.1|  904|Homo sapiens toll-like receptor 3 pr...    29   7.7  
BC094737-1|AAH94737.1|  904|Homo sapiens toll-like receptor 3 pr...    29   7.7  
BC059372-1|AAH59372.1|  870|Homo sapiens TLR3 protein protein.         29   7.7  

>U88879-1|AAC34134.1|  904|Homo sapiens Toll-like receptor 3
           protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>DQ445682-1|ABE01399.1|  904|Homo sapiens Toll-like receptor 3
           isoform NT2-N protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>BC096335-1|AAH96335.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>BC096334-1|AAH96334.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>BC096333-1|AAH96333.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>BC094737-1|AAH94737.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


>BC059372-1|AAH59372.1|  870|Homo sapiens TLR3 protein protein.
          Length = 870

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +1

Query: 259 LSPVITQIIILRVSFLLHDVIPSPWKSIVNIC*VRISNSNTAVVSLDTI 405
           L P + ++++ RV+    D  PSP++ + N+  + +SN+N A ++ D +
Sbjct: 478 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 526


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,260,208
Number of Sequences: 237096
Number of extensions: 1599383
Number of successful extensions: 2386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2386
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)