Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1728
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    28   8.4  
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726...    28   8.4  
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852     28   8.4  

>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 3   PGLQVIRHEVLAYNNKTTSLPVSVVQVIGTSSSVLVVPYRK 125
           P  + +RH    Y +K T++P +  +V+G     +  P RK
Sbjct: 828 PPWRKLRHRKAIYQDKDTAMPSNSKKVLGNRDQHMASPSRK 868


>06_01_0944 +
           7264833-7265120,7265511-7265600,7265702-7265798,
           7265927-7265988,7266508-7266596,7266702-7266822,
           7266915-7267058,7267492-7267820,7268154-7268394,
           7269042-7269245,7271150-7271619,7272703-7272746,
           7273121-7273211,7273494-7273596,7273682-7273783,
           7274214-7274300,7274421-7274531
          Length = 890

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 221 PDHPLRRINTLGQEGQVPGSHPGCIDDIPPAHKICPRP 334
           P H LR  +T  +E  VP   P C    PP   I P P
Sbjct: 560 PRHSLRTDDTPTKENPVPSLKPPC---TPPVRSIAPPP 594


>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
          Length = 259

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 236 RRINTLGQEGQVPGSHPGCIDDIPPAHKICPRPRRVYS 349
           RR +T   EG   GS  GC  ++ P H +  R R  +S
Sbjct: 42  RREDTEYGEGDYGGSGSGCGGEVVPPHVLLARRRAAFS 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,490,433
Number of Sequences: 37544
Number of extensions: 422037
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)