Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1728
(707 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 33 0.012
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 32 0.015
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 30 0.062
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 29 0.19
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 29 0.19
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 27 0.76
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 26 1.3
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 26 1.3
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 24 4.1
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 23 7.1
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 32.7 bits (71), Expect = 0.012
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 189 LTVVNCSWQLP---LITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFIL 350
+TV++ Q P IT+ G +P++R +KYL V L ++++ H+K+V +A I+
Sbjct: 717 MTVISSLQQPPEDITITVGGTEVPFSRTLKYLGVRLHYNLSWVPHVKAVIQKATQIV 773
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 32.3 bits (70), Expect = 0.015
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +3
Query: 189 LTVVNCSWQLP---LITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFIL 350
+TV++ Q P IT G ++P++R +KYL V + A +++ H+K + +A I+
Sbjct: 778 MTVISSLKQPPEEVFITFGGVNVPFSRSIKYLGVRVHAHLSWVPHVKEITLKATRIV 834
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 30.3 bits (65), Expect = 0.062
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 225 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRA 338
I + G +I +R +KYL +++D + + HIK V +RA
Sbjct: 701 IIVEGHTIRSSRHLKYLGIMIDDRLEYTQHIKYVAERA 738
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 28.7 bits (61), Expect = 0.19
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 225 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRL 359
+ + G + R ++YL V+L +++R H++ V D+A ++ L
Sbjct: 727 VNICGVEVRSKRSIRYLGVMLHDHLSWRPHVEMVADKALRVVRAL 771
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 28.7 bits (61), Expect = 0.19
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 240 ESIPWARKVKYLVVILDASMTFRLHIKSVRD---RAAFILGRLYPMICKGSKMSLR 398
E I R +KYL VI+D ++FR H++ + +AA L ++ P I G K S R
Sbjct: 697 ERIESIRHLKYLGVIIDDRLSFRKHVEYACNNVFKAAISLIQIMPNI-GGPKSSWR 751
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 26.6 bits (56), Expect = 0.76
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 GESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILG 353
G ++ K L V+LD+S+ F+ HI V R +LG
Sbjct: 835 GTAVNRQNHAKDLGVLLDSSLNFKQHIDDVVARGNQLLG 873
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 25.8 bits (54), Expect = 1.3
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 ARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICK--GSKMSLRSKVTLYKLAN 428
+R +KYL ++LD + + HI+ +RA + L M+ G ++R + L +A
Sbjct: 706 SRTLKYLGMVLDDRLEYTSHIRYAVERATKLWTTLVRMMPNKAGPSSNVRRVIALTVVAK 765
Query: 429 DPS*HTRVWC 458
+ +WC
Sbjct: 766 -VRYASPIWC 774
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 25.8 bits (54), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 255 ARKVKYLVVILDASMTFRLHIKSVRDRAAFI 347
+R ++YL V L +++ H+K V +RA I
Sbjct: 727 SRSIRYLGVTLQDKLSWLPHVKEVTERAGKI 757
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 24.2 bits (50), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 228 TLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILG 353
TL S+ ++ L +ILD+ + F+L + V +A LG
Sbjct: 761 TLSNSSLSRVLSIRDLGIILDSRLNFKLQLDEVLLKANRTLG 802
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 23.4 bits (48), Expect = 7.1
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = +3
Query: 258 RKVKYLVVILDASMTFRLHIKSVRDRA 338
R ++YL V++D ++++ H++ +A
Sbjct: 749 RSIRYLGVVIDNQLSWKSHVEYCTTKA 775
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,354
Number of Sequences: 2352
Number of extensions: 16353
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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