Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1724
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.3  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.2  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.2  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 409 KHVISDPPDPLTVL 368
           +H++ +PP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 401 DVFWATSTAFHSFRRIGN 454
           DV W  S  FHSF  + N
Sbjct: 84  DVLWVNSAVFHSFGPVVN 101


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 383 IGRIRNDVFWATSTAFHSFRRIGN 454
           +G++  DV W  S  FHSF  + N
Sbjct: 80  VGKV--DVLWVNSGIFHSFNTVLN 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,113
Number of Sequences: 5004
Number of extensions: 32463
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)