Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1724
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0718 + 20382323-20385046                                         27   7.1  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           27   7.1  
02_05_1275 - 35395228-35395642,35396682-35397250                       27   7.1  
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     27   9.3  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    27   9.3  

>08_02_0718 + 20382323-20385046
          Length = 907

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/40 (25%), Positives = 27/40 (67%)
 Frame = +2

Query: 116 LESLFQRNLN**VSSRGSNLMTLLTRTLSRAVLRRIYHRI 235
           +E + +++ +   SS+GSN+++ +T+ ++    +RIY ++
Sbjct: 72  IEDILEKSPSKTCSSKGSNILSCITQPINFVARQRIYKQV 111


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 383 IGRIRNDVFWATSTAFH 433
           +G IRN +FW+TS+  H
Sbjct: 29  VGAIRNHLFWSTSSPLH 45


>02_05_1275 - 35395228-35395642,35396682-35397250
          Length = 327

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 484 LYYYCYDPKRD 516
           +Y YCYDPKRD
Sbjct: 290 VYNYCYDPKRD 300


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 392 SSRSTNGASRYFKHRSPFSSNP 327
           +S STNG SR  KH++  S +P
Sbjct: 108 NSNSTNGTSRLLKHQAKCSPHP 129


>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 322 SDGFDENGDRCLKYLEAP 375
           SDGFDE  D C   LE P
Sbjct: 282 SDGFDEGADACAVCLERP 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,059,804
Number of Sequences: 37544
Number of extensions: 217734
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)