Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1724
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    31   0.51 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    31   0.51 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    31   0.51 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81077-10|CAB03064.1|  151|Caenorhabditis elegans Hypothetical p...    28   4.8  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 470 TFTRLHSRSCGKNGKQSTSPKTRHFGSSRSTNGASRYFKHRSPFSSNPS 324
           T T   + SC  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 524 TLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 470 TFTRLHSRSCGKNGKQSTSPKTRHFGSSRSTNGASRYFKHRSPFSSNPS 324
           T T   + SC  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 524 TLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 470 TFTRLHSRSCGKNGKQSTSPKTRHFGSSRSTNGASRYFKHRSPFSSNPS 324
           T T   + SC  NGKQ T+P   H G SR   G    F++  P  +  S
Sbjct: 524 TLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 446  SCGKNGKQSTSPKTRHFGSSRSTNGASRYFKHRSPFSSNPSLATKGSTS 300
            S   N  QSTSP T    SS  ++G +      SP  S+   +++GSTS
Sbjct: 1091 STSPNPSQSTSPSTSGATSSPGSSGTTLTSISPSPSQSSTIGSSQGSTS 1139


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 445 PAERMESSRRRPKHVISDPPDP 380
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>Z81077-10|CAB03064.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.10 protein.
          Length = 151

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 464 TRLHSRSCGKNGKQSTSPKTRHFGSSRSTNGASRYFKHRSP 342
           +R  SRS  K+ ++S S  TR    SRS + +S   K R+P
Sbjct: 71  SRSRSRSRSKSTRRSRSKSTRSRSRSRSRSRSSTRGKKRAP 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,651
Number of Sequences: 27780
Number of extensions: 184746
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)