Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1713
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        29   0.038
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.82 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 0.038
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 220 TIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIH 399
           TIQ   T  A  ++  + S  A+ +A   +     H +P+   +   HS ++  T+PA  
Sbjct: 26  TIQACTTSPATASLESSLSAAAVAAAAVNYAQQ--HNSPSPTGSSPQHSGSSASTSPAAR 83

Query: 400 ATSAIH 417
            TS+++
Sbjct: 84  TTSSMY 89


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 286 IHSAPTYHVAPAGHEAPTYHAAP---AAHSATTY--HTAPAIHAT 405
           ++S P  H    GH     HA P    +H+AT +  H+ P  H++
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSS 452


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 533 PTLNTDTLTRLKTLTPATTNLNTRPVMVMSSRVNTP 640
           P     T+T   T T  TT   T P    ++   TP
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTP 689


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 487 HAASAGHEDHYVDEYAHPKYGYSYSVED 570
           +  +  +   Y+ EY  P+Y   Y +ED
Sbjct: 200 YIVNTNYSSKYMREYNDPEYKLDYFMED 227


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 207 SSYPHHPRSSYLPCSPSSPRGFF 275
           S+ P +P       SPSSP  FF
Sbjct: 78  STSPSYPGGGSSSPSPSSPSSFF 100


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 243 PCSPSSPRG 269
           PC+PS PRG
Sbjct: 393 PCTPSPPRG 401


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 110 CAMIKPSTTRRPFTTLPCIL 169
           CAM+K +    P   L CIL
Sbjct: 193 CAMLKENMPEFPLYQLSCIL 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.126    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,102
Number of Sequences: 438
Number of extensions: 3884
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)