Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1712
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    29   0.72 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.8  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 695 FFTSLTDFVPGVLKGVVPVIVFDVKRVRCRQSLRHIIVG 579
           F  ++ DFV G++ G++   VF V +   R +LR I  G
Sbjct: 560 FTMTVVDFVVGIVIGIIMACVFFVIQASSRSALRGIYSG 598


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 291 EDNNQASTSSINRNSTNGFVELQINWNNKMYGIKING-TATVSDLKKHLELISGVPSCRQ 467
           E N+Q  +S  +  +   +  + +NW   MY  K++G  A    L K  ++IS + S ++
Sbjct: 399 EYNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKE 458

Query: 468 LISGLGGSKAVPSATLGS 521
                     VPS+TLG+
Sbjct: 459 KGIQNRHLVVVPSSTLGN 476


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 616 TRFTSNTMTGTTPLSTPGTKSVREVKNDIYSLTDIPARHQSWT 744
           T  T NT +GTT  ST  T +     +D  S +D     + WT
Sbjct: 119 TSTTLNTSSGTTLNSTSKTTTSSVAVDDQKSKSDSKKERRDWT 161


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 296 IFSIWWVCFWRYHRYIVVYHF 234
           +F IWW+ +     Y+++Y+F
Sbjct: 333 LFRIWWLKYLGPFSYLILYYF 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,158
Number of Sequences: 5004
Number of extensions: 54807
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)