Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1712
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1727 + 39477107-39477395,39477493-39477722                       32   0.57 
10_08_0361 + 17207657-17207701,17208850-17209773                       29   4.0  
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178...    29   5.3  
02_05_0092 + 25749070-25750638                                         29   5.3  
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667...    28   7.0  
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288...    28   7.0  
04_04_0715 - 27502581-27502759,27503435-27503567                       28   7.0  
04_01_0145 + 1689148-1689261,1689431-1689621,1689699-1689796,169...    28   7.0  
01_03_0029 - 11784446-11784756,11785295-11786576                       28   7.0  

>01_06_1727 + 39477107-39477395,39477493-39477722
          Length = 172

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/65 (24%), Positives = 37/65 (56%)
 Frame = +3

Query: 258 VITPKTHPPDREDNNQASTSSINRNSTNGFVELQINWNNKMYGIKINGTATVSDLKKHLE 437
           ++  K   P+ +D+    +SS++ +S    + ++++   + + + I+ TAT  DLK  L 
Sbjct: 48  MLVQKRRAPEEQDDG---SSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLS 104

Query: 438 LISGV 452
           L++G+
Sbjct: 105 LVTGL 109


>10_08_0361 + 17207657-17207701,17208850-17209773
          Length = 322

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 375 KMYGIKINGTATVSDLKKHLELISGVPSCRQLIS 476
           K  G++     TV+D+K  +E + G+P+C Q+++
Sbjct: 173 KTIGLETKRWYTVADVKLMIENLEGLPACSQILT 206


>10_08_0654 -
           19616426-19616656,19617046-19617249,19617654-19617824,
           19619617-19620411
          Length = 466

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 51  MAENREEILANFQGITAIEDVAEAIYHLDESNWDLLTAINRV 176
           MAE  ++ ++ FQ +T I D       L   NWDL  A++ +
Sbjct: 1   MAETVDDKVSYFQAVTGISDHDLCTEILAAHNWDLQLAVSSI 42


>02_05_0092 + 25749070-25750638
          Length = 522

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 75  LANFQGITAIEDVAEAIYHLDESNWDLLTAINR 173
           +A F  IT+      A+ HL    WDL  A+NR
Sbjct: 7   VATFMEITSCGSQEAAVQHLASCRWDLDAALNR 39


>10_02_0200 -
           6672743-6673717,6676257-6676634,6677017-6677301,
           6677420-6677570,6677696-6677930,6678689-6678764
          Length = 699

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 369 NNKMYGIKINGTATVSDLKKHLELISGVPSCRQLI 473
           N +   + +    TV+D+K  +E + G P+C QL+
Sbjct: 512 NRRTVRLDVESWYTVADVKVMIEALLGFPACTQLL 546


>09_06_0064 +
           20627265-20627538,20628062-20628274,20628772-20628827,
           20629417-20629533,20629701-20629820,20629910-20630004,
           20630092-20630185,20630406-20630537,20631190-20631302,
           20631423-20631657,20631950-20632028,20632029-20632161,
           20632780-20632821,20632902-20632950,20633443-20633525,
           20633686-20633802,20633893-20633956,20634334-20634486,
           20635043-20635126,20635207-20635401,20635507-20635578,
           20635599-20635610
          Length = 843

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 225 HNVEMIDDDISVITPKTHPPDRED-NNQASTSSINRNSTNGFV 350
           H VE        +  K H P   D N +ASTS+++  + NGF+
Sbjct: 442 HLVERFPMGAPYVGGKIHGPPLGDLNEKASTSTLDHGNLNGFI 484


>04_04_0715 - 27502581-27502759,27503435-27503567
          Length = 103

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 284 WWVCFWRYHRYIVVYHFNVVSVILCVRGGG 195
           WW C W+    +      VVS++L    GG
Sbjct: 3   WWRCVWQCRLVVATEEIGVVSLVLSSTVGG 32


>04_01_0145 +
           1689148-1689261,1689431-1689621,1689699-1689796,
           1693288-1693443,1694456-1695075,1695204-1695247,
           1695361-1695763,1696295-1696466,1696550-1697079
          Length = 775

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 511 VAEGTAFDPPKPDISCLHDGTPLINSRCFFKSLTVAVPLILIP 383
           V  G A+D    D + L D     NS C F+ + + +P I IP
Sbjct: 635 VDPGLAYDVDPNDYTLLLDCISAANSSCEFEPINMNLPSIAIP 677


>01_03_0029 - 11784446-11784756,11785295-11786576
          Length = 530

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 472 YRVWGDRRRSPRPPW 516
           + +W D+R+SPR PW
Sbjct: 24  FGIWSDQRKSPRLPW 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,236
Number of Sequences: 37544
Number of extensions: 377294
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)