Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1711
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   4.2  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   5.5  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 139 LRRSNIASTKW*LDTFFLISIVFFS--DLIICDKIENILK 26
           L++++   T+W L    L  I+ F+  DL+I DK++ + K
Sbjct: 381 LKKASQFDTRWNLFALTLAIIILFAFNDLVIFDKLQKLWK 420


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 70  FSDLIICDKIENILKQL*Y 14
           FSD++IC++I  +LK   Y
Sbjct: 664 FSDVLICERISKLLKNFIY 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,638
Number of Sequences: 5004
Number of extensions: 44747
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)