Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1711
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    30   1.9  
07_03_0896 + 22373348-22374946                                         29   3.3  
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196           28   7.6  

>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 66  EKNTMEIKKKVSSHHFVLAILLRRSALH 149
           EK T+E+K++    +  LA++LRR +LH
Sbjct: 697 EKKTLEVKREADELNKKLALVLRRQSLH 724


>07_03_0896 + 22373348-22374946
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 362 VTGGRW--VIAVTGTVCFKYGFFSLSHPVYIYLHES-TLRFI*TYVPS 228
           + G RW   ++V G VCF  GF SL    Y +   S    ++ T +PS
Sbjct: 198 LVGKRWRDTVSVAGFVCFTVGFLSLPALAYTFREASWRSMYLWTSLPS 245


>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
          Length = 676

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 374 RGSPVTGGRWVIAVTGTVCFKYGFFSLSHPVYIYLH 267
           RG+P +G  WV+         Y  F +  PV+  LH
Sbjct: 322 RGAPESGHDWVMRTLANRTACYNMFRMHRPVFERLH 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,376
Number of Sequences: 37544
Number of extensions: 236801
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)