Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1711
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 10  KNIIIVLKYSRSCRI*LSLRKTLWKLK-KKC 99
           KN +   KY  +C I + +R+   + + KKC
Sbjct: 217 KNAVYQCKYGNNCEIDMYMRRKCQECRLKKC 247


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 10  KNIIIVLKYSRSCRI*LSLRKTLWKLK-KKC 99
           KN +   KY  +C I + +R+   + + KKC
Sbjct: 14  KNAVYQCKYGNNCEIDMYMRRKCQECRLKKC 44


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 54  IIKSEKN-TMEIKKKVSSHHFVLAILLRRSALH 149
           ++K+  N    ++  ++SHH  L+  L RSA H
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSSALGRSACH 300


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 556 QNSRLQLCVVYLYNNYMYCNLDNEN 630
           + SR    +  L NNY Y N +N N
Sbjct: 74  ERSREPKIISSLSNNYNYSNYNNYN 98


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 589 LYNNYMYCNLDNEN 630
           L NNY Y N +N N
Sbjct: 85  LSNNYNYSNYNNNN 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,564
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)