Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1708
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 265 KCEKRGKPCTA-PARNKRECLKDRADYACV 351
           KCE+    C A P RN   C+   ADY CV
Sbjct: 252 KCEQDNGSCAAKPCRNNGFCVSLVADYFCV 281


>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 658 GAPPRVXXXXX*INCLDFLIIRTLFSWLILNIYVDISSQTWKAA 527
           G  PR       I  L+ L   T F  LIL I+ DIS  TWK++
Sbjct: 185 GEDPRYSSQTRIIIVLECLT--TFFLPLILTIFADISVLTWKSS 226


>Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical
           protein C54E10.3 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 601 IIRTLFSWLILNIYVDISSQTWKAAI 524
           +I T F  L L I+ DIS  TWK  I
Sbjct: 202 VITTFFLPLTLTIFADISVLTWKTKI 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,447
Number of Sequences: 27780
Number of extensions: 280937
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)