Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1708
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              25   0.97 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.8  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.0  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 LTSCSCVTDLNLAVHMSKPGTDLIKMRKKRKTL 290
           +T CS ++D +LAV  +K    L+K   K KTL
Sbjct: 101 ITECSAISDADLAVKSAK----LLKCIGKYKTL 129


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 556  DISSQTWKAAIPKRLNKKRSSFKTAI 479
            DIS  + + ++P+R    RSS +T +
Sbjct: 1828 DISPMSEQKSLPRRGRSSRSSLRTLL 1853


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 556  DISSQTWKAAIPKRLNKKRSSFKTAI 479
            DIS  + + ++P+R    RSS +T +
Sbjct: 1824 DISPMSEQKSLPRRGRSSRSSLRTLL 1849


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 307 FLLAQYKVFLFFRILIK 257
           F+L  Y +FL+F  L++
Sbjct: 16  FILINYFIFLYFNSLVR 32


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 262 LKCEKRGKPCTAPARNKRECLKDRADYAC 348
           +KC     PCT   R  ++ L D     C
Sbjct: 44  IKCMLDEGPCTNEGRELKKILPDALSTGC 72


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 373 YGQSLSGSR-THSPRDLLSIHVYFLL 299
           Y  S SG + T S   L+S+HV+FLL
Sbjct: 267 YLPSDSGEKVTLSISILISLHVFFLL 292


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 373 YGQSLSGSR-THSPRDLLSIHVYFLL 299
           Y  S SG + T S   L+S+HV+FLL
Sbjct: 267 YLPSDSGEKVTLSISILISLHVFFLL 292


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 262 LKCEKRGKPCTAPARNKRECLKDRADYAC 348
           +KC     PCT   R  ++ L D     C
Sbjct: 44  IKCMLDEGPCTNEGRELKKILPDALSTGC 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,184
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)