Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1704
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    64   2e-11
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    29   0.83 
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    28   1.5  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.8  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 39/141 (27%), Positives = 68/141 (48%)
 Frame = +2

Query: 263 KNSDVVNNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSILFVSMLAGRKINDLQEVLS 442
           +N+++     ++ L  KP     A +  LN  +     K  L +S+LAG+ I+ LQ +L 
Sbjct: 70  ENAEMAAISNVLLLSCKPQ----AAEDVLNSPKMKEALKGKLILSILAGKTISSLQSMLD 125

Query: 443 VLSPYADIRIIRIMPNTPMAVGAGICLYTPDNNVSQDQCKFLEDLLSSTALCERVEEPTM 622
                   R+IRIMPNT   +   + +  P  N +++  KF E + +      ++ E  +
Sbjct: 126 -----ESTRVIRIMPNTASRIRESMSVICPGPNATEEDIKFAEWVFNGIGRSMKLPEKLI 180

Query: 623 DTLGVLTACGPAFIYIVIEAL 685
           D    +   GPAF+  +IEA+
Sbjct: 181 DAATAVCGSGPAFVATMIEAM 201


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 602 FHIVQCYSIDLPKIYIDLVKHCYPVCKDIYQPLQP*VYLALSLLFLYQHKEIVHLTP 432
           F  +Q + +DL    +     C+ +CK +Y  +Q  V+++ S L   Q K   ++TP
Sbjct: 94  FWYLQAHMVDLG---LQPHSSCFKICKRLYNRIQILVFMSSSSLIQSQQKISENVTP 147


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = +2

Query: 158 EILKNDAYPASNIWVSGPHLENLQKWSLLNTNVSIKNSDV-----VNNCEIIFLGIK-PN 319
           ++ K+  +P  NI VSG H   +   SLLN  + +  SD+     ++ C   +LGI   N
Sbjct: 166 QLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKC-AKYLGIPWDN 224

Query: 320 KLETAVQQCLNGIESLSKKKSIL-FVSMLAGRKINDLQEVLSVLSPYADIRIIRIMP 487
           ++  A  +     E  S   S+   + +    K++      S L  YA  RIIR  P
Sbjct: 225 EMPAAALEQFASPEINSTSYSLKPPIPLNTREKVHSASFSFSGLESYA-CRIIRKTP 280


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 170 NDAYPASNIWVSGPHLENLQKWSLLNTNVSIKNSDVVNNCEIIFLGIKPNKLETAVQQCL 349
           N+       +VS   LE +++      +V++K   V+N+C  IFL I    +   VQ+  
Sbjct: 354 NETISELRAYVSEVELEFVKQTIKCLGDVALKVPSVINDCISIFLEIYELNISYMVQEVT 413

Query: 350 NGIESLSKK 376
             +E++ +K
Sbjct: 414 VVMETVLRK 422


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 461 DIRIIRIMPNTPMAVGAGICLYTPDNNVSQDQCKFLEDLL 580
           D  ++ +  N P+ V A    +T +N  +   C FL  ++
Sbjct: 267 DSSLVPVYKNEPLIVDADDYFFTDENKQTLSLCSFLSQVM 306


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 236 SLLNTNVSIKNSDVVN--NCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSILFVSMLA 406
           +L+NT    K S   +  + E++   I     +T+ +QCL   +S +   S +F+S+L+
Sbjct: 414 NLINTLQDKKKSSTFSKKDREVLLKKISEIDSQTSFEQCLAYADSAADLDSSVFISLLS 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,675
Number of Sequences: 5004
Number of extensions: 58072
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)