Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1704
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...    49   6e-07
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    33   0.21 
07_03_1406 + 26343915-26346032                                         29   3.5  
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020...    29   4.6  
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961...    29   4.6  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    28   8.0  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score = 49.2 bits (112), Expect(2) = 6e-07
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
 Frame = +2

Query: 131 GICQQQLFKEILKNDAYPASNIWVSGPHL--ENLQKWSLLNTNVSIKNSDVVNNCEIIFL 304
           G   + + + +  +   PA+ I  + PH   E  + +S +  ++   N+ VV++ ++I +
Sbjct: 27  GNLAESIARGVAASGVLPATAIRTA-PHRRPERAEAFSSIGAHILETNAQVVDDSDVIVI 85

Query: 305 GIKPNKLETAVQQCLNGIESLSKKKSILFVSMLAGRKINDLQEVLSVLSPYADIRIIRIM 484
            +KP      V+Q L  ++ L  ++ +L VS+ AG K+ DLQ      S +   R IR+M
Sbjct: 86  SVKPQ----IVRQVLVELKPLLSEEKLL-VSIAAGIKMEDLQG----WSGHR--RFIRVM 134

Query: 485 PNTPMAVGAGICLYTPDNNVSQDQCKFLEDLLSSTALCERVEEPTMDTL 631
           PNTP AVG    +       +++    +  L S+       EE   D +
Sbjct: 135 PNTPSAVGQAASVMCLGEMATENDENRVRSLFSAIGKVWTAEEKYFDAV 183



 Score = 21.8 bits (44), Expect(2) = 6e-07
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 650 GPAFIYIVIEAL 685
           GPA+I++ IEA+
Sbjct: 217 GPAYIFLAIEAM 228


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/92 (25%), Positives = 45/92 (48%)
 Frame = +2

Query: 212 HLENLQKWSLLNTNVSIKNSDVVNNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSILF 391
           H+E L++W  L  NV++    + ++ + ++  + P K E   ++  NGI  L +KK  + 
Sbjct: 445 HMEVLRRWMDLQRNVNV----LYDSSKGLYAFMHPLK-EAKNEKNANGIRQLLEKKEGIL 499

Query: 392 VSMLAGRKINDLQEVLSVLSPYADIRIIRIMP 487
              + G+++N     +    PY  +  I I P
Sbjct: 500 RQKMMGKRVNYACRSVISPDPYLAVNEIGIPP 531


>07_03_1406 + 26343915-26346032
          Length = 705

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
 Frame = +2

Query: 218 ENLQKWSLLNTNVS---IKNSDVVNNCEIIFLGIKPNKLETA-VQQCLNGIESLSKKKSI 385
           +++  WS L    S   + N  V   CE+I LGI PN    A +  CL+ ++ +   K I
Sbjct: 324 KDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEI 383

Query: 386 LFVSMLAGRKINDLQEVLSVLSPYADIRIIRI 481
              S+  G + ++   V +++  Y+   +IR+
Sbjct: 384 HCFSIRHGLERSEF-VVSALIDLYSKQGLIRV 414


>09_04_0619 -
           19001350-19001359,19001737-19001800,19001955-19002099,
           19002434-19002917,19003175-19003260,19003417-19003484,
           19003565-19003709,19004561-19004677
          Length = 372

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 306 PRNIISQLLTTSEFFMLTFVFKSDHF 229
           PR +++  LT S F ML  + K DHF
Sbjct: 5   PRQVVAGFLTLSMFVMLGNMIKHDHF 30


>09_04_0245 +
           15995689-15995742,15995979-15996075,15996165-15996185,
           15996442-15996573,15996707-15996834,15996919-15997203,
           15997391-15997521,15999700-15999817,16000609-16000703,
           16001437-16001511,16001860-16001911,16002767-16002859,
           16003625-16003690,16003785-16003867,16003942-16004054,
           16005271-16005410,16005569-16005643,16006084-16006160,
           16006426-16006514,16008039-16008085,16009004-16009138,
           16009298-16009345,16009605-16009667,16009709-16009730,
           16010284-16010458,16014250-16014321,16014887-16014958,
           16015904-16016005,16016197-16016225,16016333-16016403,
           16016549-16016597,16016684-16016784,16017495-16017623,
           16017683-16017752,16017975-16018194,16019368-16019389,
           16019457-16019604,16021569-16021693,16022344-16022774,
           16022984-16023110,16023241-16023292,16023351-16023502
          Length = 1461

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 149 LFKEILKNDAYPASNIWVSGPHLENLQKWSLLNTNVSIKNSDVVNNC-EIIFLGIKPNKL 325
           +F  I +    P   + V+GP    L+KW+L N N+  +  D +++C  +I L    N L
Sbjct: 781 VFALIKQQPTLPLPKLPVAGP----LRKWNLANNNLEGQIPDNISSCINLISLNFSNNNL 836


>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
            18999226-18999495,18999903-19000454,19000546-19000770,
            19001435-19001640,19001738-19001936,19002166-19002381,
            19002887-19002991,19003127-19003243,19003366-19003548,
            19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 242  LNTNVSIKNSDVVNNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSIL 388
            +NTN   KN + + +C+++++     K +  V   L  +E+L  KK  L
Sbjct: 901  INTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSKKVFL 949


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,065
Number of Sequences: 37544
Number of extensions: 333122
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)