Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1704
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...    75   5e-14
U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...    38   0.007

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 2/187 (1%)
 Frame = +2

Query: 131 GICQQQLFKEILKNDAYPASNIWVSGPHLEN--LQKWSLLNTNVSIKNSDVVNNCEIIFL 304
           G   Q L + ++ +    A NI  S P  +   L +   L  N +  N++VV   +++FL
Sbjct: 9   GKMAQALARGLINSGRITADNIIASSPKRDEVFLDQCKALGLNTTHDNAEVVQKSDVVFL 68

Query: 305 GIKPNKLETAVQQCLNGIESLSKKKSILFVSMLAGRKINDLQEVLSVLSPYADIRIIRIM 484
            +KP  +     +      +LSK+   L VS+  G  I +++ +L   S     R++R+M
Sbjct: 69  AVKPVHVSKVASEIA---PALSKEH--LVVSIALGITIRNIESLLPTKS-----RVVRVM 118

Query: 485 PNTPMAVGAGICLYTPDNNVSQDQCKFLEDLLSSTALCERVEEPTMDTLGVLTACGPAFI 664
           PNTP  V AG   +   +       + +E LLS+      V E  +D +  L+  GP+++
Sbjct: 119 PNTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDPVTGLSGSGPSYM 178

Query: 665 YIVIEAL 685
           + VIE L
Sbjct: 179 FAVIEGL 185


>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
 Frame = +2

Query: 182 PASNIWVSGPHLENLQKWSLLN-TNVSIKNSDVVN--NCEIIFLGIKPNKLETAVQQCLN 352
           P SNI +     ++ +KW  L   NV     +++   +  I  + +KP   E  V     
Sbjct: 40  PKSNIVIGVQTEKSAEKWRQLGYKNVFTNTLEMLERYSTAIYVICVKPQVFEEVVSSW-- 97

Query: 353 GIESLSKKKSILFVSMLAGRKINDLQEVLSVLSPYADIRIIRIMPNTPMAVGAG---ICL 523
               ++ +   + +S++AG  +  L   L  +S   +  I+R+MPN   ++GAG   +C 
Sbjct: 98  ---PVNSRPEFI-ISVMAGVPLKVLNAKLPFVS--GNTTIVRLMPNVASSIGAGASTMCY 151

Query: 524 YTPDNNVSQD-QCKFLEDLLSSTALCERVEEPTMDTLGVLTACGPAFIYIVIEAL 685
              +  ++QD   +   +        E + E   +    +    PA+ ++ IE+L
Sbjct: 152 EKNEKIMNQDSHIELAREFAECVGTVELIPERCFNPAMAIGGSSPAWTFMYIESL 206



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 85  TNNMSNNFKIGFVGGGNMSTAIVQG 159
           TN  S +    F+GGGNM+ AI++G
Sbjct: 8   TNGSSESVPFVFIGGGNMAAAIIKG 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,662
Number of Sequences: 27780
Number of extensions: 328713
Number of successful extensions: 849
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)