Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1696
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    29   0.69 
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    29   0.91 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.91 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.91 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   1.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.5  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 605 CFSTILTFSRLCTSLYAFV--YGWVQNLLEIYQHPF 504
           C   IL    +C++ Y+ +  YG++ N++ +Y H F
Sbjct: 91  CLRAILNIVTICSNSYSILVNYGFILNMVHMYVHVF 126


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 614 NAYGNGATKPYLPYSNYLPSQNPPSLPYPVGPLNMPMPGMY 736
           ++YGNGA+  Y   ++  PS +P S  YP      P P  Y
Sbjct: 289 SSYGNGASTNY--NASRPPSNHPHSSNYPSSSRRKPSPDRY 327


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 479 IARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAE 580
           IA +F   KM  DK +ED  PI+K  H+  ++AE
Sbjct: 500 IAYEF-KNKMAYDKSIEDNAPIKKFEHLPFFEAE 532


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 350 LCLKKIIHNIIAISETKSAGISPDTTHALLQTAAAESEEQSDNIARDFL 496
           LCL  I  N+I +  + +  +SPD+   L+ +    S  + DNI  + L
Sbjct: 769 LCLP-IAENVIVLKNSTAQLVSPDSIQELVPSTFFSSNTKKDNIEEENL 816


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
 Frame = +2

Query: 329  GCELVHHLCLKKI-IHNIIAISETKSAGIS---PDTTHALLQTAAAESEEQSDNIARDFL 496
            G +L+ H+    + +H I  +  TK   I    P TT  +LQ +   S  Q+   ARD +
Sbjct: 1294 GFDLLGHVGFLGVPLHKIYRLLTTKLWDIQGQFPLTTSLVLQLSQLISGSQAGPFARDTI 1353

Query: 497  SGKMGVDKFLEDFEPIRKQM-HIRKYKAEKMSELLRNSNQNAYGN 628
               M   KF+ +   +  Q+ H  ++  E    L R    + YGN
Sbjct: 1354 HALMDEPKFMANGSILSNQVNHHLRFVIE---YLRREGLLDVYGN 1395


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/63 (36%), Positives = 27/63 (42%)
 Frame = +2

Query: 533 FEPIRKQMHIRKYKAEKMSELLRNSNQNAYGNGATKPYLPYSNYLPSQNPPSLPYPVGPL 712
           F      M  R    E M+  L  SN  +  N +T   LP SN LPSQN P+ P    P 
Sbjct: 298 FNAFFSSMPDRPSSNEPMTSNL-TSNSGSMTN-STSTDLPTSN-LPSQNAPARPVEPSPS 354

Query: 713 NMP 721
             P
Sbjct: 355 IQP 357


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 641 PYLPYSNYLPSQNPPSLPYPVGPLNMPM 724
           P +P    LP   PPSLP P  P ++PM
Sbjct: 415 PPVPTPPSLPPSAPPSLP-PSAPPSLPM 441


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 596 LRNSNQNAYGNGATKPYLPYSNYLPSQNPPSLPYPVGPLNMP-MPGMY 736
           + N+   +Y   +++P +P  N LPS N  SLP    P  MP MP  Y
Sbjct: 103 INNNFGYSYVGQSSQP-VPSYNPLPSYNTASLPNAGIPAAMPGMPSGY 149


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 635  TKPYLPYSNYLPSQNPPSLPYPVGPLNMPMPGM 733
            T P  P SN+ P   PP+  + V P+    PGM
Sbjct: 1434 TNPGAP-SNHAPQVVPPAPMHAVAPVQPKAPGM 1465


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 668 PSQNPPSLPYPVGPLNMPM 724
           PS  P SLP P G +N PM
Sbjct: 638 PSNPPRSLPPPSGQVNAPM 656


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 524 LEDFEPIRKQMHIRKYKAEKMSELLRNSNQN 616
           L + E IRK++   KY+ +  ++ L N+N +
Sbjct: 674 LSEMEAIRKELENSKYQQQLSTDRLTNANND 704


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 356 LKKIIHNIIAISETKSAGISPDTTHALLQTAAAESEEQSDNIARDFL 496
           ++ IIH I+  +   S G+S     AL + A+ E E+   ++   F+
Sbjct: 644 IQSIIHVILPKAADTSPGVSSAIISALGELASVEGEDMPVDVRGSFM 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,086
Number of Sequences: 5004
Number of extensions: 64681
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)