Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1696
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 30 1.7
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 30 1.7
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646 29 3.8
06_03_1146 - 28004896-28005554,28005664-28005844 29 3.8
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 29 3.8
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 29 3.8
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 29 5.1
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663... 28 6.7
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 28 8.8
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 8.8
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 8.8
01_01_0256 - 2083973-2084816,2084922-2086093 28 8.8
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 620 YGNGATKPYLP-YSNYLPSQNPPSLPYPVGPLNMPMPGM 733
Y +G PY P Y Y+P PP +PYP P P M
Sbjct: 413 YYHGQYPPYYPPYGGYMP---PPRMPYPPPPQYPPYQPM 448
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 503 KMGVDKFLEDFEPIRKQMHIRKYKAEKMSELLRNSNQNAYGNGATKPYLPYSNYLPSQNP 682
+ GVD +L E IR + H + E+M ++LR + T+ + NY+PS P
Sbjct: 559 RSGVDDYL--MEEIRMRSH-EILENEEMQQMLRILSMGGASTNLTEDGFAFPNYMPS-TP 614
Query: 683 PSLPY 697
P+ +
Sbjct: 615 PNFNF 619
>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
Length = 429
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 414 HQIQLMHFCKQQLQNQKN 467
HQ QLM+ QQLQNQ+N
Sbjct: 212 HQAQLMNLMMQQLQNQQN 229
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 662 YLPSQNPPSLPYPVGPLNMPMP 727
+ P +PP++P PV P+ MP P
Sbjct: 139 HAPPPSPPAVPPPVAPVPMPSP 160
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 641 PYLPYSNYLPSQNPPSLPYPVGP 709
P PY+NY P PPS P P+ P
Sbjct: 395 PLSPYTNY-PDLKPPSSPSPLAP 416
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 437 LQTAAAESEE-QSDNIARDFLSGKMGVDKFLEDF-EPIRKQMHIRKYKAEKMSELLRNSN 610
LQ A ++S+ Q N+ D + +F +DF E IR + H + ++E M +LLR +
Sbjct: 584 LQQAISQSQSIQPANVGYDDWTRSQN-GQFADDFTEDIRMKSH-QMLESEDMQQLLRVFS 641
Query: 611 QNAYGNGATKPYLPYSNYLPSQNP 682
+ + Y+PS P
Sbjct: 642 MGGASTSLQEDAFGFPTYMPSPLP 665
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 392 ETKSAGISPD-TTH---ALLQTAAAESEEQSDNIARDFLSGKMGVDKFLEDFE 538
E +S I+ D T+H L T AES++Q +A D +GK+ V + +D E
Sbjct: 830 EVQSEDIATDPTSHESSTLHITDGAESKKQDAKVAADLAAGKIDVPRSADDAE 882
>03_04_0122 +
17465804-17465893,17466028-17466147,17466287-17466317,
17466978-17467153,17468051-17468142,17468259-17468340,
17468498-17468566,17468655-17468759,17471246-17471342,
17471438-17471676,17472191-17472949,17473079-17473297
Length = 692
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 608 CCFSTILTFSRLCTSLYAFVYGWVQNLLEIYQH 510
C I+TF +C+ + A VY W+ N + H
Sbjct: 374 CRHPNIITFIGVCSKISALVYEWLPNGRNLEDH 406
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 66 KILSP*IYTG*TYFTNISINHLLVEGRLVSPQG*VPPPCYFCREGVMYF-SLKGGVAVLT 242
KIL P +YT F ++NH + E + V +G PC +G M F S GG +
Sbjct: 439 KIL-PDLYTNFAQF-KYAVNHNISEAKEVFVEGIKQAPCKALIKGFMQFMSTHGGPTEIP 496
Query: 243 IL 248
IL
Sbjct: 497 IL 498
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 611 QNAYGNGATKPYLP-YSNYLPSQNPPSLPYPVGPLNMPMPG 730
QNAYG+ + Y+P Y P P++ YP G P+PG
Sbjct: 150 QNAYGSYVGQQYVPVYGG--PRTVGPAV-YPYGQFGQPVPG 187
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 611 QNAYG-NGATKPYLPYSNYL-PSQNPPSLP 694
Q+A G GAT Y PYSN + P N P P
Sbjct: 65 QSAMGITGATDSYAPYSNSVQPGYNAPQYP 94
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 608 NQNAYGNGATKPYLPYSNYLPSQNPPSLPYPVGPLNMPMP 727
NQ+ N AT ++P +Y P P P P +P P
Sbjct: 476 NQHFIHNPATGTFIPIQSYYHHPVPQQAPQPPMPQPVPQP 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,600,652
Number of Sequences: 37544
Number of extensions: 417144
Number of successful extensions: 1269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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