Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1693
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0466 + 3649500-3649635,3649925-3650520                           28   7.4  
09_03_0084 + 12198185-12198460,12198560-12198700,12198782-121991...    28   7.4  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   9.7  

>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 387 LQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWP 280
           LQ H +   +R    T LFE+  QL L   P G  P
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGDRP 186


>09_03_0084 +
           12198185-12198460,12198560-12198700,12198782-12199114,
           12199197-12199344,12199424-12199494,12199709-12199801,
           12200412-12200486,12200529-12200540
          Length = 382

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = -3

Query: 606 HAAWLKKQP*IFGSFLVLDRRDPSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKV 427
           HAAW+ + P   G F  +      K     L Y  T  P+   P     S+ +R   R V
Sbjct: 88  HAAWMARHPSALGEFEKVVAASKGKQIVMFLDYDGTLSPIVDDPDAAFMSETMRMAVRSV 147

Query: 426 LR 421
            +
Sbjct: 148 AK 149


>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -3

Query: 369  GSSRRNHQFTNLFEMPSQLPLVKRPHGRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVG 190
            G  +  HQ  +   MP+   ++    G   + R+ +L  HVL  LIL+   +   Y+++ 
Sbjct: 1209 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 1268

Query: 189  NV 184
            N+
Sbjct: 1269 NI 1270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,899
Number of Sequences: 37544
Number of extensions: 379948
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)