Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1690
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 429 DFQRITRGGARYPIRP 476
           D + I R  +RYP+RP
Sbjct: 112 DIETIIRRNSRYPLRP 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 QRLPRPTNQNAL-QLHGRNRQGGGTYPCGLTR 246
           ++LP    Q+ L +L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 QRLPRPTNQNAL-QLHGRNRQGGGTYPCGLTR 246
           ++LP    Q+ L +L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 411 KTSGAIVSSDTTTVFEF 361
           +T+G+  ++ TTTV++F
Sbjct: 294 RTTGSRAAATTTTVYQF 310


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 411 KTSGAIVSSDTTTVFEF 361
           +T+G+  ++ TTTV++F
Sbjct: 294 RTTGSRAAATTTTVYQF 310


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 411 KTSGAIVSSDTTTVFEF 361
           +T+G+  ++ TTTV++F
Sbjct: 294 RTTGSRAAATTTTVYQF 310


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 352 TYFEFEHRCCIARY 393
           TYF F+ + CI ++
Sbjct: 156 TYFPFDQQTCIMKF 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,688
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)