Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1688
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   8.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 324 LPVRDRGRAAQVCRAWRDAADRRS 395
           L  RD+     V R+WR+  D  S
Sbjct: 256 LYTRDQSETYDVLRSWRNLMDEHS 279


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 142 TNGLALPSYRARRRGE 189
           T  L  PSYR + RGE
Sbjct: 566 TKELLSPSYRVKERGE 581


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -2

Query: 352 AARPLSRTGSLSNISANNSGYSLEM*VP*GSV 257
           + + L+ TG++S ++ NN+  + ++ +P  S+
Sbjct: 713 STQSLTTTGNVSYLTTNNTSNNSQLQIPRASL 744


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 262 SLRELTSRGCIQSC 303
           S R L  RGCI++C
Sbjct: 46  SERMLRKRGCIEAC 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,022
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)