Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1686
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   6.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.1  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.1  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 95  FISHK*SNKISRLM*EKYLVLVEHIVIN 12
           F+    +  +SRL  +KYLVL  H++IN
Sbjct: 313 FVEQLKAGTLSRLPFQKYLVLKYHMLIN 340


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 709 PFKGIETHIPHTRSDHH 659
           PF   + H PHTR  HH
Sbjct: 162 PFPPTQHHHPHTRPPHH 178


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 180 SRPTEKIRREAQ*IVNIISSMNNLIDE 100
           SRPT  I ++A+  +N + +  N+ID+
Sbjct: 91  SRPTFSIEQDAEKKINELQTFTNIIDQ 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,280
Number of Sequences: 5004
Number of extensions: 68621
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)