Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1686
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0629 - 8279609-8280244                                           31   1.3  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    29   4.1  
08_02_1461 - 27299891-27301870                                         29   4.1  
01_06_0637 + 30763657-30763858,30765600-30766261                       29   4.1  
06_01_0192 - 1485444-1485491,1485582-1485648,1485780-1485890,148...    29   5.4  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           28   7.2  
10_01_0220 + 2365237-2366673                                           28   9.5  

>04_01_0629 - 8279609-8280244
          Length = 211

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +1

Query: 88  DIKSLVYQIIHT*DNIYNLLSFSADFLSGSRFRFVGSGVR 207
           D + LV+QI+H  D + + LS    FL+  RF FVG GVR
Sbjct: 80  DRRCLVFQILHA-DYVPDALS---RFLADPRFTFVGVGVR 115


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 757 HCSEKYDELKLDNS*L--PFKGIETHIPHTRSDHHDC*C 647
           HC  ++ ++   N  L  PFK I  H+ HT  ++HD  C
Sbjct: 365 HCFIRFFKMMWKNYLLSGPFKVINGHLDHTLRNYHDAVC 403


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 445 LLHGRNRQGSGTHPRGLTVGPTTS 516
           LL GR R G G H RGL V P  S
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVS 313


>01_06_0637 + 30763657-30763858,30765600-30766261
          Length = 287

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 94  KSLVYQIIHT*DNIYNLLSFSADFLSGSRFRFVGSGV 204
           + LV+QIIH  D + + L    DFL   RF FVG G+
Sbjct: 161 RCLVFQIIHA-DYVPDQLG---DFLGDGRFTFVGVGI 193


>06_01_0192 -
           1485444-1485491,1485582-1485648,1485780-1485890,
           1486278-1486343,1486814-1486878,1486952-1487014,
           1487215-1487337,1487777-1487887,1488030-1488148,
           1488721-1488806,1488918-1489267
          Length = 402

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 268 ILVLFFYCLYGWTSSQPT 321
           IL LF+Y ++GW   +PT
Sbjct: 378 ILTLFYYAIFGWRKRKPT 395


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 454 REAVMRFGLKGRAAVVSILETLELISQGGWRIYVVYG 344
           R A++R  +KG+  +  ++  LE +  GGWR  V +G
Sbjct: 345 RAALIRV-IKGKLTINEVIAELERLIPGGWRRMVEWG 380


>10_01_0220 + 2365237-2366673
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 682 PHTRSD--HHDC*CNGVWLVGLNSYSSIY 602
           P+ RSD  +H+C C  VW+     +S +Y
Sbjct: 205 PNYRSDEWNHECICTRVWISETKEWSEVY 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,865,851
Number of Sequences: 37544
Number of extensions: 442011
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)