Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1686
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 658 DC*CNGVWLVGLNSYSSIYHFP 593
           +C C+  WL G+N+ +S   +P
Sbjct: 683 NCNCSMDWLPGINNQTSTREYP 704


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 490 RADGYHYPAYFC 455
           RA GYHY A  C
Sbjct: 193 RASGYHYNALTC 204


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 569 LAYQINKFSTMNSSTYQLLVVGPTVSPRGWVPLPCLFLP 453
           LA+    F T N+   ++  +  T+S    V + CLF P
Sbjct: 862 LAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSP 900


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 509 VGPTVSPRGWVPLPCLFLP 453
           VG TV+P    PLP L LP
Sbjct: 463 VGTTVAPCFEEPLPSLPLP 481


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -2

Query: 605 IPLPSPNMWGGDLAYQINKFSTMNSSTYQLLVVGPTVSPRGWVP 474
           +P+P P  +G      +  F ++     +L  +GP  S   ++P
Sbjct: 346 VPVPFPVYYGNFPPRPMGPFVSIQEQIPRLRYIGPPTSFPRFIP 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,728
Number of Sequences: 438
Number of extensions: 5441
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)