Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1683
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   4.7  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   6.3  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   8.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.3  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 CFIGYMQGRI*T*CRSWAPEKIRPHTGI 343
           C +GY+ G+  T  +S  PE +R   GI
Sbjct: 314 CCVGYIGGKTQTEAQSKLPENVREALGI 341


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 142 YTGDAEERQEFINLEEE-EAADF 207
           +T D EE + F+N EEE  A+DF
Sbjct: 279 WTTDDEELESFVNEEEEFRASDF 301


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 270 PIKQKKKHRCRSEGESPTVPVKV 202
           P K++KKH    EGE+  + + V
Sbjct: 17  PDKKRKKHESEKEGENEVLEIDV 39


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  CFRPPHRRAGPRDRARTERVH 146
           C RP H  A P+D A  +R+H
Sbjct: 417 CMRPKHFDANPKD-AHVDRLH 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,939
Number of Sequences: 5004
Number of extensions: 31961
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)