Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1683
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0838 - 8185083-8185910                                           30   0.89 
10_08_0561 + 18787074-18787379                                         27   6.3  
10_08_0560 - 18782806-18783108                                         27   6.3  
10_08_0559 - 18771235-18771537                                         27   6.3  
10_08_0347 - 17032996-17033295                                         27   8.3  
05_07_0321 + 29239846-29239897,29240208-29240382,29240416-292404...    27   8.3  
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292...    27   8.3  

>08_01_0838 - 8185083-8185910
          Length = 275

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 88  SGHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADF 207
           SG   GERG       +V  GDAEE ++    EEE+   F
Sbjct: 86  SGASAGERGRSSSHRSDVKLGDAEEEEDDDEDEEEKCRRF 125


>10_08_0561 + 18787074-18787379
          Length = 101

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 64 LIAPCRLSVFLGTSSTASC 8
          L++PC   +F GT+ +ASC
Sbjct: 39 LLSPCAAPIFFGTAPSASC 57


>10_08_0560 - 18782806-18783108
          Length = 100

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 64 LIAPCRLSVFLGTSSTASC 8
          L++PC   +F GT+ +ASC
Sbjct: 38 LLSPCAAPIFFGTAPSASC 56


>10_08_0559 - 18771235-18771537
          Length = 100

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 64 LIAPCRLSVFLGTSSTASC 8
          L++PC   +F GT+ +ASC
Sbjct: 38 LLSPCAAPIFFGTAPSASC 56


>10_08_0347 - 17032996-17033295
          Length = 99

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 96  PHRRAGPRDRARTERVHGGRGRAPGVHQP 182
           P    G R  A    VHGG  R PGV  P
Sbjct: 62  PEEGGGGRYEAVAALVHGGGARVPGVVNP 90


>05_07_0321 +
           29239846-29239897,29240208-29240382,29240416-29240468,
           29240640-29240700,29242193-29242211
          Length = 119

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 127 ARSRGPARRCGGLKQNTETKSLIAPCRLSVFLGTSSTASCRI 2
           +++R P+R C G  Q TE K+ +    L++ + T     C++
Sbjct: 47  SQTRHPSRACTGDVQETEVKADLPRLHLTLLIKTVMVWMCKL 88


>03_03_0184 +
           15228045-15228405,15228725-15228883,15228984-15229258,
           15229346-15229594,15229670-15229788,15229874-15229972,
           15230068-15230176,15230281-15230421
          Length = 503

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 199 ADFDRYGGRLTLRATPMFFFLFYWLYAGPDLNLMPLL 309
           A FD+Y G +T+ AT      +Y+  A  D +  PL+
Sbjct: 79  AGFDQYAGYVTVNATSGKALFYYFAEATDDPSTKPLV 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,113
Number of Sequences: 37544
Number of extensions: 230626
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)