Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1683
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-19|CAA19464.2| 293|Caenorhabditis elegans Hypothetical... 38 0.003
Z92782-6|CAB07191.1| 319|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 2.4
AL132948-23|CAC51049.1| 429|Caenorhabditis elegans Hypothetical... 28 3.2
AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical ... 27 7.5
AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical ... 27 7.5
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 9.9
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 9.9
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 9.9
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 9.9
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 9.9
>AL023828-19|CAA19464.2| 293|Caenorhabditis elegans Hypothetical
protein Y17G7B.17 protein.
Length = 293
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 91 GHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFDR 213
GH IG+R H I+++++ G+ ++Q F NL+E A FDR
Sbjct: 149 GHSIGDRSHFIDKKRD-REGNVRKQQRFQNLDEASAEAFDR 188
>Z92782-6|CAB07191.1| 319|Caenorhabditis elegans Hypothetical
protein F14F8.7 protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 131 SRSITWPRSPMWWP--ETKHRDEIINCPLSIIGVFRYLKHRLV 9
S S+ SP+ +P ETK +IN +S IG+F + H LV
Sbjct: 4 STSVNIEGSPLQYPSRETKFYLHLINVAISFIGIFPSVFHFLV 46
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 115 HVIEREQNVYTGDAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLFYWLYA 279
+V+E+++ D E R+ LE + + Y ++ MFF LF+W A
Sbjct: 316 YVVEQKRRAQL-DEELRESRRRLESDMELAYQDYQAQMLREGYLMFFLLFFWFRA 369
>AL132948-23|CAC51049.1| 429|Caenorhabditis elegans Hypothetical
protein Y39B6A.31 protein.
Length = 429
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 85 VSGHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLF 264
V + E + + + + D ER +I L FD Y + L T FFF
Sbjct: 311 VDSWKVSEENAQLPKRYSSFYVDIGERCSWIRLWITNIEKFDSYNNSMKLDETIDFFF-D 369
Query: 265 YWLYAGPDLN-LMPLLG 312
Y GPD + PL G
Sbjct: 370 QQFYVGPDSDKARPLAG 386
>AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical
protein C53C7.1b protein.
Length = 362
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 241 TPMFFFLFYWLYAGPDLNLMPLL 309
TP+ F WL+ GP +L+PLL
Sbjct: 85 TPITAFSKVWLFGGPLCHLLPLL 107
>AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical
protein C53C7.1a protein.
Length = 365
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 241 TPMFFFLFYWLYAGPDLNLMPLL 309
TP+ F WL+ GP +L+PLL
Sbjct: 85 TPITAFSKVWLFGGPLCHLLPLL 107
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 341 ILTKLIVYIFYFSKLK*TNLFAENLSYVIH 430
I+T ++ Y YF+KLK N+ + + VI+
Sbjct: 252 IITYVVTYYHYFNKLKQDNIQGKRIGKVIN 281
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 341 ILTKLIVYIFYFSKLK*TNLFAENLSYVIH 430
I+T ++ Y YF+KLK N+ + + VI+
Sbjct: 252 IITYVVTYYHYFNKLKQDNIQGKRIGKVIN 281
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 341 ILTKLIVYIFYFSKLK*TNLFAENLSYVIH 430
I+T ++ Y YF+KLK N+ + + VI+
Sbjct: 252 IITYVVTYYHYFNKLKQDNIQGKRIGKVIN 281
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 341 ILTKLIVYIFYFSKLK*TNLFAENLSYVIH 430
I+T ++ Y YF+KLK N+ + + VI+
Sbjct: 252 IITYVVTYYHYFNKLKQDNIQGKRIGKVIN 281
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 341 ILTKLIVYIFYFSKLK*TNLFAENLSYVIH 430
I+T ++ Y YF+KLK N+ + + VI+
Sbjct: 252 IITYVVTYYHYFNKLKQDNIQGKRIGKVIN 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,086,056
Number of Sequences: 27780
Number of extensions: 190580
Number of successful extensions: 496
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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