Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1682
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   105   3e-24
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    39   2e-04
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.20 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   0.46 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.80 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   0.80 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   1.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   1.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   1.8  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   2.4  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   3.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   5.6  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   5.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   7.4  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    24   7.4  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   9.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   9.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  105 bits (251), Expect = 3e-24
 Identities = 47/98 (47%), Positives = 70/98 (71%)
 Frame = +3

Query: 99  KSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 278
           K+ YF K+  L  +Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 279 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 392
           ++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N +
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVI 105


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +3

Query: 96  GKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI--- 266
           GK+  F  + Q L  +   +I    N+ +  +++IR   +GS I  MGK  +M KA+   
Sbjct: 22  GKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHT 80

Query: 267 --KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEV 365
             ++H +N   L KLL    G VG +FT     EV
Sbjct: 81  PEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEV 112


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 229 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATL 330
           CS EKT  C++  K+  T+ +PS  CC   ++T+
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTV 295


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 28/90 (31%), Positives = 44/90 (48%)
 Frame = +1

Query: 106 TTSLRSSNSWASTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTT 285
           +T + SS S +ST+  SS+     A +  + S S YVAPVS S   +   +  S T++  
Sbjct: 165 STEVASSYSASSTEVTSSYP----ASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVP 220

Query: 286 IQPSRNCCHTSRATLALCSPAETSLRSATN 375
                    TS +++AL S   ++  SA N
Sbjct: 221 ---------TSSSSIALSSVVASASVSAAN 241


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 295 RAGLLSRWSLMALRIIVFFPMSTILEPR 212
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 373 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 248
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 106 LDFPSSLVLPTHPG*CGVGTSMKFKDKTKRTAC 8
           L   +SL+LP   G C + TS   K K+ + AC
Sbjct: 193 LQVAASLLLPALSGSCALLTSYSAKSKSLQVAC 225


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 23/91 (25%), Positives = 40/91 (43%)
 Frame = +1

Query: 106 TTSLRSSNSWASTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTT 285
           +T + SSN   S+    +  P+T      S SV     PV+ +   T  C     TT T+
Sbjct: 506 STPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-----TTSTS 560

Query: 286 IQPSRNCCHTSRATLALCSPAETSLRSATNC 378
           +  +     +S  T++  +P  ++  + TNC
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNC 591



 Score = 24.2 bits (50), Expect = 7.4
 Identities = 20/91 (21%), Positives = 38/91 (41%)
 Frame = +1

Query: 106 TTSLRSSNSWASTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTT 285
           TT+  +S S   T    +  P+T      S S+     PV+ +   T  C   +   +T+
Sbjct: 447 TTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTS 506

Query: 286 IQPSRNCCHTSRATLALCSPAETSLRSATNC 378
              +     +S  T++  +P  ++  + TNC
Sbjct: 507 TPVT-----SSNYTISSSTPVTSTPVTTTNC 532


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 51  PTPHYPGWVGRTRLLGKSN 107
           P  HYP WV RT   G SN
Sbjct: 151 PLLHYPAWVRRTSPSGISN 169


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 388  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 227
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 271 SLMALRIIVFFPMSTILEPRSEXXXXXXXCEPTLSAPTMKHFGYSPKSWMILTK*LDFPS 92
           S+ A+ I   FP    L+P  +         P+L   +M H  ++  ++    + L   S
Sbjct: 103 SVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDS 162

Query: 91  SLVL 80
           SL+L
Sbjct: 163 SLIL 166


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 147 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 293
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 88  GYLGSLTTSLRSSNSWASTQNVSSWVPITWARNR 189
           GYL    +    ++S A +  + SWVP ++ +NR
Sbjct: 52  GYLSLSKSKALGNSSVAGSDILLSWVPDSFLKNR 85


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +2

Query: 248 NDAQSHQRPPGQQSSPRETVATHQGQRWLCVHPRRPR*GPRQTVGEQSS 394
           ND  +H   P     PR T   +    +    P   R GPR      SS
Sbjct: 577 NDLHAHGGMPVNMRGPRNTSRNNSSSEFNAQIPMNLRNGPRNASRSNSS 625


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 329 NVALDVWQQFLEGWIVVQVVF 267
           N  +  W +F +GW +  V F
Sbjct: 431 NTYIGRWHKFFQGWFITLVTF 451


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 166 APTMKHFGYSPKSWMILTK*LDFPSSLV 83
           +PT  +  YSP +W IL     + SSLV
Sbjct: 74  SPTGTYLLYSPCTWSILMAAYAYDSSLV 101


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 225 IVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVE 362
           I L+G N ++     DH+  +P ++   P+I      V ++GDLV+
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLVK 444


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 135 GEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPH 314
           G Y   F V  DNV S+  Q +  +L+   +    ++ ++RK IKD  +N   +E +   
Sbjct: 285 GPYEDFFKVVVDNVSSRDWQPVLANLK-LELAKFRQDVIVRK-IKD--ENGREIEYICGR 340

Query: 315 IKGN 326
           + G+
Sbjct: 341 MTGS 344


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 395  WNFVLQQFVADLNEVSAGEHKAN 327
            WN +L Q V+ +NE S  +H+ +
Sbjct: 2145 WNSMLDQSVSMINEDSVEDHETH 2167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,045
Number of Sequences: 5004
Number of extensions: 38155
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)